LOCUS       NM_001270416             941 bp    mRNA    linear   ROD 07-OCT-2023
DEFINITION  Rattus norvegicus stem-loop binding protein like (Slbpl), mRNA.
ACCESSION   NM_001270416 XM_002728533 XM_003753034
VERSION     NM_001270416.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Thelie A, Pascal G, Angulo L, Perreau C, Papillier P and
            Dalbies-Tran R.
  TITLE     An oocyte-preferential histone mRNA stem-loop-binding protein like
            is expressed in several mammalian species
  JOURNAL   Mol Reprod Dev 79 (6), 380-391 (2012)
   PUBMED   22467188
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            JACYVU010000299.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001270416.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JQ361072.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JACYVU010000299.1  15798652-15798776
            126-228             JACYVU010000299.1  15798889-15798991
            229-330             JACYVU010000299.1  15802117-15802218
            331-435             JACYVU010000299.1  15802326-15802430
            436-588             JACYVU010000299.1  15803503-15803655
            589-709             JACYVU010000299.1  15803783-15803903
            710-941             JACYVU010000299.1  15805520-15805751
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..941
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="stem-loop binding protein like"
                     /db_xref="GeneID:100363294"
                     /db_xref="RGD:2323347"
     exon            1..125
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            126..228
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    188..190
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="upstream in-frame stop codon"
     exon            229..330
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     CDS             266..775
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="stem loop binding protein 2"
                     /codon_start=1
                     /product="uncharacterized protein LOC100363294"
                     /protein_id="NP_001257345.2"
                     /db_xref="GeneID:100363294"
                     /db_xref="RGD:2323347"
                     /translation="

MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH"

     misc_feature    344..553
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="Histone RNA hairpin-binding protein RNA-binding
                     domain; Region: SLBP_RNA_bind; pfam15247"
                     /db_xref="CDD:434569"
     exon            331..435
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            436..588
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            589..709
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            710..941
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aatcttgaggaactgttttggagtcaagtgttcgcttctccttgcttctttctcttgggttttgttacctttcggctggaaatggagctcctgccaccggtgtgacagtggttggggcatgacaggagggtttcatgcctataatcccagcacttagaagactgtaatcgaagagtcgccgtgagtttgaggacatcccgcagtgagtccagatcgccgtgggctagactgcagaagctgcttccccagaaagaaggtgtgtgaaatgtctttgtcctctaggatggagatggtaagtgtgggagtcaccacagagccttgtcatgccaggtgggaagttgagacagatgaagtggtcctgaggcggcggcagaagcagatagactatggcaagtgcacacctgggtaccagagctttctgcagcaggtccccagggcacagcgacagccgggttttcaccctcaaacaccaaacaaaaacaggaggtacagccgcagatcctgggatgcccagatcaggcagtggagaagagccctgcatacctgggaccccccaagccagcctctccatgacagacaggctgaagggaaggcagcagggaacttcctaaggccagtggatactgctcctttagatgatctcctggataactggccccaggacccagaatcctcagagaattgggacagaggcgagaaagaggcccagtttgcatacttgaaggttcctgcttcctgccctccccagctcaaagatgaacttctccatcactaagtctgctgctgtttacctatcccagacaaggggggattcaaagcattcacagcgaacactttatttttagggatttgctgctacaactgtataataatgaaatgactggaattactttttttttaattaccactttaaccgattaaaaaagaaatctaaaactcca

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