2024-04-29 14:50:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001191573 1183 bp mRNA linear ROD 20-OCT-2022 DEFINITION Rattus norvegicus transmembrane protein 40 (Tmem40), transcript variant 3, mRNA. ACCESSION NM_001191573 XM_002729444 VERSION NM_001191573.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000149.1. On Oct 20, 2022 this sequence version replaced NM_001191573.1. ##Evidence-Data-START## RNAseq introns :: partial sample support SAMN06680447 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## CDS uses downstream in-frame AUG :: upstream AUG and CDS extension is not conserved ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-36 JACYVU010000149.1 1142097-1142132 c 37-117 JACYVU010000149.1 1127641-1127721 c 118-252 JACYVU010000149.1 1126882-1127016 c 253-306 JACYVU010000149.1 1121056-1121109 c 307-342 JACYVU010000149.1 1119478-1119513 c 343-375 JACYVU010000149.1 1118903-1118935 c 376-423 JACYVU010000149.1 1118570-1118617 c 424-495 JACYVU010000149.1 1116442-1116513 c 496-570 JACYVU010000149.1 1116269-1116343 c 571-633 JACYVU010000149.1 1115703-1115765 c 634-1183 JACYVU010000149.1 1114354-1114903 c FEATURES Location/Qualifiers source 1..1183 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="4" /map="4q42" gene 1..1183 /gene="Tmem40" /gene_synonym="RGD1306976" /note="transmembrane protein 40" /db_xref="GeneID:680858" /db_xref="RGD:1587025" exon 1..36 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" misc_feature 18..20 /gene="Tmem40" /gene_synonym="RGD1306976" /note="upstream_AUG_codon; putative N-terminal extension: MSPGTPGKE" exon 37..117 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" CDS 45..653 /gene="Tmem40" /gene_synonym="RGD1306976" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="transmembrane protein 40 isoform 3" /protein_id="NP_001178502.1" /db_xref="GeneID:680858" /db_xref="RGD:1587025" /translation="
MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKSSSSSSSSSSSSSSSSSSSSSSSSGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN"
misc_feature 288..647 /gene="Tmem40" /gene_synonym="RGD1306976" /note="Transmembrane protein 40 family; Region: TMEM40; pfam15817" /db_xref="CDD:374141" exon 118..252 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 253..306 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 307..342 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 343..375 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 376..423 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 424..495 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 496..570 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 571..633 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" exon 634..1183 /gene="Tmem40" /gene_synonym="RGD1306976" /inference="alignment:Splign:2.1.0" ORIGIN
ctcgcattgctgctcacatgagcccagggactccagggaaagagatggaggcttcaggatcttcttctcagtctccaaacagcagtgcggtccacagagaaacagaagatctaaaccacccagagacagagttccacaagcaacatgggaaggcccgggaacgctatgagagagacaagtcttcctcctcatcctcctcctcctcttcctcctcttcctcctcttcctcctcatcttcttcctcctcctcaggtgctgaccatggggaactggaggtgctgaaggacgagcttcagctctatggaggcgctgctggggaaatggtgcttgctggggagtcaggactccgaaggagaggttccggctcagcggagggagaagtggaggcctctcagttaaacagactgaacataaagaaggatgatgagtttttccattttgtccttctctgcttcgccattggagccttgctggtgtgctaccactactattcagactggttcatgtctcttggggttggtctgctcaccttcgcttctctggagaccatcggcatctacttcgggctggtgtaccggatccacagcgtacttcagggcttcatccccctccttcagaagttcaggctgccagggttcaggagaaccaactgagatcactgcccgacagcagctgagccagtccccaatgtgaccactgtaaccactgccaaacctgagcccagaatacagagtgacatgctggaagacactaggaggccacacaacaaagagctctttccttccgtgtgatctgagtgtcagctgatctgagtgggcaagctcttgttctgcagattagcacacagtctccatggggaagagagaaggcacagcatctgggtcagcaagaaagagctgggatgccattgctctcaggggtagcatgagtcttgggccttgcaggctggcatcttcgggcttgggtatctctggtgtcctcaggccatgctcatgaactcacagttccagcagagccatcttgggacagctatcctgaggcagggagctaccaggctgggtccccaggggaacctgcagataagatactggggaccaaagctgtagaccatcacccagtgaccaaccctgttgcccttggacttctaaaacccaaataaatattctattccctgtgctaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]