2024-05-04 23:23:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001109166 2000 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus T-cell leukemia, homeobox 1 (Tlx1), mRNA. ACCESSION NM_001109166 XM_001057997 XM_574674 VERSION NM_001109166.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2000) AUTHORS Brendolan A, Ferretti E, Salsi V, Moses K, Quaggin S, Blasi F, Cleary ML and Selleri L. TITLE A Pbx1-dependent genetic and transcriptional network regulates spleen ontogeny JOURNAL Development 132 (13), 3113-3126 (2005) PUBMED 15944191 REMARK Erratum:[Development. 2005 Aug;132(15):3575] REFERENCE 2 (bases 1 to 2000) AUTHORS Qian Y, Shirasawa S, Chen CL, Cheng L and Ma Q. TITLE Proper development of relay somatic sensory neurons and D2/D4 interneurons requires homeobox genes Rnx/Tlx-3 and Tlx-1 JOURNAL Genes Dev 16 (10), 1220-1233 (2002) PUBMED 12023301 REFERENCE 3 (bases 1 to 2000) AUTHORS Kanzler B and Dear TN. TITLE Hox11 acts cell autonomously in spleen development and its absence results in altered cell fate of mesenchymal spleen precursors JOURNAL Dev Biol 234 (1), 231-243 (2001) PUBMED 11356032 REFERENCE 4 (bases 1 to 2000) AUTHORS Dube ID, Kamel-Reid S, Yuan CC, Lu M, Wu X, Corpus G, Raimondi SC, Crist WM, Carroll AJ, Minowada J et al. TITLE A novel human homeobox gene lies at the chromosome 10 breakpoint in lymphoid neoplasias with chromosomal translocation t(10;14) JOURNAL Blood 78 (11), 2996-3003 (1991) PUBMED 1683261 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1. On or before Oct 4, 2007 this sequence version replaced XM_001057997.1, XM_574674.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN09345331, SAMN11044071 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2000 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1q54" gene 1..2000 /gene="Tlx1" /gene_synonym="RGD1563655" /note="T-cell leukemia, homeobox 1" /db_xref="GeneID:499361" /db_xref="RGD:1563655" exon 1..778 /gene="Tlx1" /gene_synonym="RGD1563655" /inference="alignment:Splign:2.1.0" CDS 202..1203 /gene="Tlx1" /gene_synonym="RGD1563655" /codon_start=1 /product="T-cell leukemia homeobox protein 1" /protein_id="NP_001102636.1" /db_xref="GeneID:499361" /db_xref="RGD:1563655" /translation="
MEHLGPHHLHPGHAEPISFGIDQILNSPDQGGCMGPASRLQDGEYGLGCLVGGAYTYGGGGSAAGAGAGGTGAYGTGGPGGPGGPAGGGGGACSMGPLAGSYNVNMALAGGPGPGGGGGGAGAGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAVPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE"
misc_feature order(814..828,832..834,883..885,901..903,940..942, 946..951,958..963,967..975,979..984) /gene="Tlx1" /gene_synonym="RGD1563655" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 820..981 /gene="Tlx1" /gene_synonym="RGD1563655" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(820..822,829..831,949..951,958..963,970..972) /gene="Tlx1" /gene_synonym="RGD1563655" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 779..980 /gene="Tlx1" /gene_synonym="RGD1563655" /inference="alignment:Splign:2.1.0" exon 981..2000 /gene="Tlx1" /gene_synonym="RGD1563655" /inference="alignment:Splign:2.1.0" ORIGIN
ggaaggagaagccggagaggggaagaatacagctctccctctctcctccccctcccccctactttggcccttctgcgcacttcgccttcaagtctcaccgcagcctggagcggcgattgcctccgcgcccctactcgctgcccgggtagtccagcgcagcgagcgcccgcgcccgggcccccgcgtggggccggggccagcatggagcacctgggtccgcaccatctccacccgggccacgcggagcccatcagcttcggcatcgaccagatcctcaacagcccggaccagggcggctgcatggggcccgcctcgcgcctccaggacggagaatacggccttggctgtttggtcggaggcgcctacacttatggcggagggggttccgccgctggagcgggggccgggggcacaggcgcttacggcaccggtggcccgggtggtcccggaggcccggcgggcggtggcggaggtgcctgcagcatgggcccactggccggctcctacaacgtgaacatggccttggcgggcggcccgggtccgggaggcggcggcggtggcgcgggtgccggtggcgccggtgcgctgagcgctgcaggggtgatccgggtgcccgcgcacaggccgctagctggagctgtggcccatccccagcccctggccaccggcttgcctactgtgccctctgtgcctgcggtgccgggtgtcaacaacctcaccggcctcaccttcccctggatggagagtaaccgcagatacacaaaggacaggttcacaggtcacccctatcagaaccggacgccccctaagaagaagaagccgcgtacatccttcacacgcctgcagatctgtgagctggaaaagcgcttccaccgccagaagtacttggcttcggcggagcgcgctgctctggccaaagcgctcaaaatgaccgatgcgcaagtcaaaacctggttccagaacaggaggacgaaatggaggcgacagacagcagaggagcgtgaggccgagaggcagcaggcgaaccgcatcctcttgcagctgcagcaggaggccttccagaagagcctggcccagccgctgcctgcagacccactgtgcgtgcacaactcgtcgctctttgccctgcagaacctgcagccgtggtctgacgactccaccaaaatcactagcgtcacgtccgtggcttcggcctgtgagtgaggacccaagcccaattgagggctatccggagaaccagaactctcgataccttttctgagtgcacgcaggaagggaacgggcttctcagcaaggctcccagcaccgcctcacacccctgaggacactgtccggtcttcggtggaagagggtggagatagaggcagaagcctgcgtgatcctgtctcactctggaactgttcagaatctcctctttttctctatttcataaaatttactctgattttaacatgggacagagagacccaagggatgtagggtcctgaaggcttctgggatccccaggcagccatccgtactaaggctggaaacctctctattcctttcctcctacatccacacagaggtgataccactgtccctcctggcgtcaccttagagccacatgcaggggccgatggcagagcatcacagcacatacaggatcacaacaaatgacccttgccgttgggcacagtctagggtgacacttggactcgcccaaacagcacggacctcctcttactcgaacacaaggccatagtcacatagtgacacaccagcccacacacaacagctaaacctggcctgtcaggtccctcgccacacatcccagcggcacccaggtatgcacagacaggctttcacacaaatgcagcccatttctccagatcctgtttggggaggggggtaagttatgcacttataagttatgcacttataaggtgttttctgtgtaaccattttataaagtgcttgtgtaatttatgtggaaaaataataaaaccctcccgatcagg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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