2024-04-25 19:56:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001108142 4741 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus SID1 transmembrane family, member 2 (Sidt2), mRNA. ACCESSION NM_001108142 XM_001068825 VERSION NM_001108142.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4741) AUTHORS Takahashi M, Contu VR, Kabuta C, Hase K, Fujiwara Y, Wada K and Kabuta T. TITLE SIDT2 mediates gymnosis, the uptake of naked single-stranded oligonucleotides into living cells JOURNAL RNA Biol 14 (11), 1534-1543 (2017) PUBMED 28277980 REFERENCE 2 (bases 1 to 4741) AUTHORS Contu VR, Hase K, Kozuka-Hata H, Oyama M, Fujiwara Y, Kabuta C, Takahashi M, Hakuno F, Takahashi SI, Wada K and Kabuta T. TITLE Lysosomal targeting of SIDT2 via multiple YxxPhi motifs is required for SIDT2 function in the process of RNautophagy JOURNAL J Cell Sci 130 (17), 2843-2853 (2017) PUBMED 28724756 REFERENCE 3 (bases 1 to 4741) AUTHORS Aizawa S, Fujiwara Y, Contu VR, Hase K, Takahashi M, Kikuchi H, Kabuta C, Wada K and Kabuta T. TITLE Lysosomal putative RNA transporter SIDT2 mediates direct uptake of RNA by lysosomes JOURNAL Autophagy 12 (3), 565-578 (2016) PUBMED 27046251 REFERENCE 4 (bases 1 to 4741) AUTHORS Gao J, Yu C, Xiong Q, Zhang Y and Wang L. TITLE Lysosomal integral membrane protein Sidt2 plays a vital role in insulin secretion JOURNAL Int J Clin Exp Pathol 8 (12), 15622-15631 (2015) PUBMED 26884831 REMARK GeneRIF: Sdit2 may play a vital role in the regulation of insulin secretion via two SNARE proteins synap1 and syanp3. Publication Status: Online-Only REFERENCE 5 (bases 1 to 4741) AUTHORS Li W, Koutmou KS, Leahy DJ and Li M. TITLE Systemic RNA Interference Deficiency-1 (SID-1) Extracellular Domain Selectively Binds Long Double-stranded RNA and Is Required for RNA Transport by SID-1 JOURNAL J Biol Chem 290 (31), 18904-18913 (2015) PUBMED 26067272 REFERENCE 6 (bases 1 to 4741) AUTHORS Gao J, Gu X, Mahuran DJ, Wang Z and Zhang H. TITLE Impaired glucose tolerance in a mouse model of sidt2 deficiency JOURNAL PLoS One 8 (6), e66139 (2013) PUBMED 23776622 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 4741) AUTHORS Jialin G, Xuefan G and Huiwen Z. TITLE SID1 transmembrane family, member 2 (Sidt2): a novel lysosomal membrane protein JOURNAL Biochem Biophys Res Commun 402 (4), 588-594 (2010) PUBMED 20965152 REFERENCE 8 (bases 1 to 4741) AUTHORS Schroder B, Wrocklage C, Pan C, Jager R, Kosters B, Schafer H, Elsasser HP, Mann M and Hasilik A. TITLE Integral and associated lysosomal membrane proteins JOURNAL Traffic 8 (12), 1676-1686 (2007) PUBMED 17897319 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473975.1. On Oct 4, 2007 this sequence version replaced XM_001068825.1. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00132261, SAMD00132262 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4741 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="8" /map="8q22" gene 1..4741 /gene="Sidt2" /gene_synonym="RGD1308311" /note="SID1 transmembrane family, member 2" /db_xref="GeneID:315617" /db_xref="RGD:1308311" exon 1..1001 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" misc_feature 402..404 /gene="Sidt2" /gene_synonym="RGD1308311" /note="upstream in-frame stop codon" CDS 441..3380 /gene="Sidt2" /gene_synonym="RGD1308311" /codon_start=1 /product="SID1 transmembrane family member 2" /protein_id="NP_001101612.1" /db_xref="GeneID:315617" /db_xref="RGD:1308311" /translation="
MTSAGGRSPAVYRGAAPGGPEFCAASAALKGPASGKPTGQGHRRLGSPGASGRRVSSRAGPGWGCGSRCRPREPGSARGPGAAPGRGRVLSQAGVKVLVPVRCWKLLRQPQRARSPSRRQPPPPRAMIAWRLPLCVLLVAAVESHLGALGPKNVSQKDAEFERTYADDVNSELVNIYTFNHTVTRNRTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGLYQRKYLYQKVERTLCQPPTKNESEIQFFYVDVSTLSPVNTTYQLRVNRVDNFVLRTGELFTFNTTAAQPQYFKYEFPDGVDSVIVKVTSKKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDFPSNSFYVVVVVKTEDQACGGSLPFYPFVEDEPVDQGHRQKTLSVLVSQAVTSEAYVGGMLFCLGIFLSFYLLTVLLACWENWRQRKKTLLVAIDRACPESGHPRVLADSFPGSAPYEGYNYGSFENGSGSTDGLVESTGSGDLSYSYQGHDQFKRRLPSGQMRQLCIAMDRSFDPVGARPRLDSMSSVEEDDYDTLTDIDSDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDLYALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSVIHIISTLLLSTQLYYMGRWKLDSGIFRRILHVLYTDCIRQCSGPLYTDRMVLLVMGNIINWSLAAYGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF"
misc_feature 1326..3377 /gene="Sidt2" /gene_synonym="RGD1308311" /note="dsRNA-gated channel SID-1; Region: SID-1_RNA_chan; pfam13965" /db_xref="CDD:433611" exon 1002..1123 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1124..1288 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1289..1334 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1335..1436 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1437..1520 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1521..1620 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1621..1686 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1687..1780 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1781..1833 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1834..1905 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1906..1977 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 1978..2040 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2041..2159 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2160..2233 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2234..2300 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2301..2374 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2375..2498 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2499..2616 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2617..2753 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2754..2862 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2863..2939 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2940..2986 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 2987..3092 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 3093..3203 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 3204..3317 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" exon 3318..4741 /gene="Sidt2" /gene_synonym="RGD1308311" /inference="alignment:Splign:2.1.0" ORIGIN
cgacagctgagcttcgttcagtgggcaggcgcttcttcggtttttatgaaccaatgaggaaaaaaaatgaagttggggtaatggtttgggggaacaattcctgcttgagcagagacaatctgtcaacaagacccagcacttactgggcactgtgaaactatcctgaaacgccaacaccaagcagtagaggcatgaggaggatcaggagttcaagattctccaagcgaacataaccagttccaggatagcctgggttatgtgagcctccgtctcaaaaaaacaaaaacgcggaccacaacaccaagaatccaacacttagttatccttcgtggaaaaaatatcactctagacgcccacaggactgcgaaggaaggaggtggcgacggtgcgtgggaagcagttagacgaggtctggccctttaaatccgcgtcggtttcccatgacgtcagcgggcgggcgcagccccgctgtttaccgcggcgcggcgcctggtggccccgagttctgtgccgcgtccgccgcccttaaagggcccgcgtccgggaagcctacgggccagggccaccgccgcctcggctctccgggcgcgagcggacgccgggtctccagccgggctgggccgggctggggttgcgggtcgcggtgccgcccacgcgagccggggtccgcgcgaggcccaggagcggctccagggaggggacgcgtcctatctcaggccggggttaaagttctggtcccggtgagatgctggaagctgctgcggcagccgcaacgcgcccggtcgccgtcccgtcgccagcccccgccgccccgggccatgatcgcctggcgtctgcccttgtgcgtgctcctggtggccgccgtcgagagccacctgggggctctggggcccaagaacgtctcgcagaaagacgcggagtttgagcgcacctacgcggacgacgtcaacagcgagctagtcaacatctacaccttcaaccacaccgtgacccgcaaccggaccgagggcgtgcgagtgtctgtgaacgtcctgaacaaacagaaaggggcgcctttgctgttcgtggtccgccagaaggaggctgttgtgtccttccaggtgcccctaatcctgcgagggctataccagcgtaagtacctctaccaaaaagttgaacgaactctgtgtcagccccccaccaagaatgagtctgagatccagtttttctatgtggatgtgtctaccctgtcaccagtcaataccacttaccagctccgagtcaaccgtgtggacaatttcgtgctcaggactggggagctgtttaccttcaataccactgcagcccaaccccagtacttcaaatacgagtttcctgatggtgtggactctgtcattgtcaaggtgacctccaagaaggccttcccctgctctgtcatctccatccaggatgtcctgtgcccagtctatgatcttgacaacaatgtagccttcatcggcatgtaccagacaatgactaagaaggcagccatcactgtgcagaggaaagacttccccagcaacagtttttatgtggtggtggtggtgaagactgaggaccaggcctgcggggggtccttgcccttctaccctttcgtggaagatgaaccagtggatcaagggcaccgtcagaaaaccctgtcagtgctggtctctcaggctgtcacttctgaggcctacgttggtgggatgctcttttgcctgggcatattcctgtcgttctacctgctgactgtgctgctggcctgttgggagaactggaggcaaaggaagaagaccttgctggtggccatagaccgagcctgcccagaaagcggtcaccctcgggtcttggctgattcgtttcctggcagtgccccctatgagggttacaactatggctcctttgagaatggttccggatccactgacgggttggttgaaagcacaggttcaggggacctctcctacagttaccaggggcacgaccagttcaagcggcgccttccctctggccagatgcggcagctgtgcattgccatggaccgctcctttgacccagtgggagctcggccacgactggactccatgagctccgtggaagaggatgactatgacacactgactgacatcgactcagacaaaaacgtcattcgaaccaagcaatacctctgtgtggctgatctggcacgaaaggacaaacgtgttttacggaaaaagtaccagatttacttctggaacatagccaccattgcagtcttctacgcccttcctgtggtgcagctggtgatcacctaccagacggtggtgaatgtcacggggaaccaggacatctgctactacaacttcctctgtgcccacccactgggcaacctcagcgccttcaacaacatcctcagcaacctggggtacattctgcttggtctgctcttcctgctcatcatcctgcagcgggagatcaatcataaccgggccctgctgagaaatgacctctatgctctggagtgtgggatccccaaacactttggtctattttatgccatgggcacagcgttgatgatggaggggctactgagtgcctgttaccacgtctgccccaactacaccaacttccagttcgatacctcgttcatgtacatgattgctggcctctgcatgctgaagctctaccagaagcggcacccagatatcaacgccagcgcctacagcgcatacgcctgcctggccattgtgatcttcttctccgtcctgggtgtggtttttggcaaagggaacacagccttctggatcgtcttctcagtcatccatatcatttccacgcttctcctcagcactcagctgtattacatgggccgctggaagctggactccggaatcttccgccgcatccttcatgtgctctacacagactgcatccggcagtgcagcgggcccctttacacggaccgcatggtgcttctggtcatgggcaacattatcaactggtcgctggctgcctacggactcatcatgcgcccaaatgactttgcgtcctacttgctggcaattggcatctgcaacttgctgctgtattttgctttctacatcattatgaagctccggagcggcgagaggatcaagctcatccctctgctctgcatcgtgtgcacctccgtggtctggggcttcgcactcttcttcttcttccagggactcagcacgtggcagaaaacccccgcagagtccagggagcacaaccgagactgcatcctccttgacttctttgatgaccacgacatctggcacttcctgtcctccattgctatgtttgggtccttcctggttttattgacgttggatgacgacttggacactgtacagcgggacaagatctatgtcttctagcagcgtctgtggtccaggcttcacttcatgggcccagcgcctctgcgtcaccttccagttgccacaggagcaccaagggtgtgagtcccagctctgctacccagcactggacgtcgtggcaagacagcgagttccagctcaggcctgactcaggacagttactggtgacactgaaccttgcagttacctctgctgcggaggaggcctgctccgcaaccccagacactggccaaattgctgctgcttgcttctcagtgtccggtcctccccaggaccctggtctgtccatctgtcttgtttatccactggctctccatttgtccctttggagaggaaggcaggaagtcaatgtcctgcccccttcatgccttgcattctacccatcccttccctccttttggcctaggacacagcctttcttcttcccgtgctctgccccaggacatagtctggtgcctgattctctgtccagcaccaggacctacattctccctgggtctgtagctggctatcactgcccactctggcctgccaggatggatgcaggtaggagactttgggggctggccggctggtgccaggctttcggtgctaaggcccacaaggggtctaggtacgaccctcctccctgacctgtgcgtggagctggctctacagcagtgagggccagcccaggctgaatcttttgatctggggactgaattcagaggccacctcatcctaccagccactagaatgatgccagcaccggggttggtgggaagtggcaacttactgtcctcttccgtaccctcagtcctgccaagccccagatgggggcccctcagtgccattgacactgcccaagaatgtccagaggccatgggatggtgccaagcacacaaccccttttgcctctttcaggggagcaggagtcccagtgcctgtcttagaaagggagggacatgccaagtccctgtgagtccttagtcctgtctcaccaaaggactcagggctggtttctgagtttccgtccagtatttagccaagttctgtgttagtcacataggcctaagagccttgacgtttacagagtcacccagctctggcccctggccactctggtccttggcgtttacagagtcacccagctctaggccccggccactctagtccttggctatccttcactccaccaggtccattccagatgccaagagtcctctccaccatggttttctagctcttgggctgggagaagaggcaggtctgggcctttgtttctgagctctgttctgtgttcctccatgctacggttgcaattctgttttctatgaacgagtgcattcaataaagacagcccgacctgggatctggtctta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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