2024-05-04 18:02:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001108116 2734 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus homeo box C5 (Hoxc5), mRNA. ACCESSION NM_001108116 XM_235702 VERSION NM_001108116.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2734) AUTHORS Moon SM, Ahn MY, Kwon SM, Kim SA, Ahn SG and Yoon JH. TITLE Homeobox C5 expression is associated with the progression of 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis JOURNAL J Oral Pathol Med 41 (6), 470-476 (2012) PUBMED 22385119 REMARK GeneRIF: These results indicate that overexpression of HOXC5 is correlated with oral carcinogenesis and strongly contributed to the development of OSCC. HOXC5 may be a useful biomarker and has an emerging therapeutic target of OSCC. REFERENCE 2 (bases 1 to 2734) AUTHORS McIntyre DC, Rakshit S, Yallowitz AR, Loken L, Jeannotte L, Capecchi MR and Wellik DM. TITLE Hox patterning of the vertebrate rib cage JOURNAL Development 134 (16), 2981-2989 (2007) PUBMED 17626057 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474035.2. On Oct 4, 2007 this sequence version replaced XM_235702.3. ##Evidence-Data-START## Transcript exon combination :: AW530620.1, BF565809.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2734 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="7" /map="7q36" gene 1..2734 /gene="Hoxc5" /note="homeo box C5" /db_xref="GeneID:315341" /db_xref="RGD:1307584" exon 1..528 /gene="Hoxc5" /inference="alignment:Splign:2.1.0" misc_feature 33..35 /gene="Hoxc5" /note="upstream in-frame stop codon" CDS 75..743 /gene="Hoxc5" /codon_start=1 /product="homeobox protein Hox-C5" /protein_id="NP_001101586.1" /db_xref="GeneID:315341" /db_xref="RGD:1307584" /translation="
MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL"
misc_feature 267..>500 /gene="Hoxc5" /note="Uncharacterized membrane protein [Function unknown]; Region: COG5373" /db_xref="CDD:227665" misc_feature order(540..554,558..560,609..611,627..629,666..668, 672..677,684..689,693..701,705..710) /gene="Hoxc5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 546..707 /gene="Hoxc5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(546..548,555..557,675..677,684..689,696..698) /gene="Hoxc5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 529..2734 /gene="Hoxc5" /inference="alignment:Splign:2.1.0" ORIGIN
cccctcaacttcaaagagtcacaaatcacccttaatcaaaaagggtgcagaaatttttttgggccctccccgccatgagctcctacgtagccaattcattctataagcagagccccaatatccctgcctataacatgcaaacttgtgggaactatggatcggcctcagaggtgcaggcatccaggtactgctacggcggattggacttaagcatcactttcccaccgcctgcgccttccaactctctccacggggtagacatggctgccaacccccgggctcaccccgaccgccccgcctgcagcgctgcggccgctccgggacacgctctgggcagagacgaagcggctcctctgaaccctgggatgtacagtcagaaggcggcccgcccggcgctggaggagcgagctaagagcagtggggagatcaaagaggagcaggcgcagacagggcagcctgccggactgagccagccaccggccccgccacagatttacccgtggatgaccaaactgcacatgagccacgagacggatggcaagcggtcccgaaccagttacacgcgctaccagaccctggaactcgagaaagaattccattttaaccgctacctcactcgccgcaggcgcatagagatcgccaacaacttgtgtctcaacgagagacagatcaagatctggttccagaaccgcaggatgaagtggaagaaagattccaaaatgaagagcaaagaggctctttagagcaagcagggagccctcctcagagagcaccctggtccgctgtggtccctgcgcccttccttttcggttttcctccttctagattttgaggcaaaggctagagcactggctcccggcctcccagacaaaagcgcatttctttggcattccgaatccccatcgacccagggttctgcaggaccgcctgcactgcctgtcttgcctcagctcagctgagcaccccaggcccggggcacattcttgtagggcgggtactgaataagcctcagtctgggttgcctctcccagctctgagccctagctcggctaacctgagttaaggtgagacagactgtaaccccttctccccgacctccacctcacccccttctttgttcctgcctaggctggccaggctgctgaaggctggttgtgccaggcagagcctatggccagaatccggggtgctttcaactaacctttataacttctaaactcgtctttgcttattaatgatttgcatatgaaagagggagataagtgaaagtgggcctgtagccctggaggttgtcctatgctctctaaaccttccaaccccctccctaaagcccgggatcttccctagcctggcttgctgcatgcactctcaggttcacagtcccagcctgctagctagctcaactattggggtctcttgcctttggaccctagcaagtggttctttgaagctttttgctatcctatgtatcttgccatgactttctcaccttcctgcccccattgcagttgcccaactatttattgactccaagtccttcctgaaactatattttgtcatatcaaataaagccagaaaaagaacaggactaaagattcaatgacttctgtctgtttagggcatgcattgagtagatgtgtgtaaataggctctgagatgtatggggaggccctgtctctaagccacccctttaaaaatatttttaagcacgtttaggatcagcaaggatagggaaaaactgagtgcctttttgattcatggttccaagaagggcctctggggtgaaggggagtacactggagagctcctgtactgttgtactgtcgtttccacatgatgtggggtgtacaaggcacccagacttttctatatcttattctcatgttggctaaaaagactcgaggcttctagactttctgtagtctgtgctttatgtcagagcaaaggaacttgtggctccactgacttagattcaggcccttctgggtctaggttatccctggggttcttttctggacatggaagaacggctgggtcctcagtcttgggctatgtttgatctcagaggattctcagcaatcgtaggcagtacttggtaaaggggttttggagaagaggagttgaccttggtttgagatgttcttcagctttctaagacatgggatggggcaagggggactagggggacactgaatgcaacctgcagtgtgtgcttgccttagagaaaacatacaaactgctccctgtcttctaaggtctaagccaatgcagggcagttaactggagtaagagcggtgtagaccagggcaggatccatgcctatttgtcatctatcacagtctctgagattttgtataaatggggagggtggctgataggagaggggacacagctaattcacagggggcggggctggcctaggctcatgctcttgccagctccactccagggtccacgagatggaggagggagtactttacaggagaaacaaatgcggtgtaggtccataaaactttactgcacttcctctccagcttcccacaatggggtgatttcctggagccaagcctaggccccccaccctggaggagtggggatctgaagccgggctaaaggctgctctacactaggacagaaagagaacagagtaactctgaggaggggcagggagatttctttttatgattattaatgtttatgctctttggatttattgaaggtctgacttcactgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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