2024-05-04 17:14:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001107040 1629 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus distal-less homeobox 4 (Dlx4), mRNA. ACCESSION NM_001107040 XM_001081314 XM_220870 VERSION NM_001107040.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1629) AUTHORS Chase MB, Fu S, Haga SB, Davenport G, Stevenson H, Do K, Morgan D, Mah AL and Berg PE. TITLE BP1, a homeodomain-containing isoform of DLX4, represses the beta-globin gene JOURNAL Mol Cell Biol 22 (8), 2505-2514 (2002) PUBMED 11909945 REFERENCE 2 (bases 1 to 1629) AUTHORS Quinn LM, Johnson BV, Nicholl J, Sutherland GR and Kalionis B. TITLE Isolation and identification of homeobox genes from the human placenta including a novel member of the Distal-less family, DLX4 JOURNAL Gene 187 (1), 55-61 (1997) PUBMED 9073066 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473948.1. On or before Oct 4, 2007 this sequence version replaced XM_220870.4, XM_001081314.1. ##Evidence-Data-START## Transcript exon combination :: HQ616894.1 [ECO:0000332] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1629 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="10" /map="10q26" gene 1..1629 /gene="Dlx4" /note="distal-less homeobox 4" /db_xref="GeneID:303469" /db_xref="RGD:1308744" CDS 1..717 /gene="Dlx4" /codon_start=1 /product="homeobox protein DLX-4" /protein_id="NP_001100510.1" /db_xref="GeneID:303469" /db_xref="RGD:1308744" /translation="
MTSLPCPLPGLGPSNVVFPDLAPASSVVAAYQLGLSPGTAASPDLSFSQTYGHLLSYSYPGPATPGDSYLSSQQQSAAPSRPFHQPTEHPQELEAESEKLALSLEPSQPSLTRKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQSSGELEEDFSGRPPSLSPHSLTLPSIWDLPKAGTLPTSGYDNSFGTWYQHHSPDVLALPQRM"
misc_feature order(346..360,364..366,415..417,433..435,472..474, 478..483,490..495,499..507,511..516) /gene="Dlx4" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 352..513 /gene="Dlx4" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(352..354,361..363,481..483,490..495,502..504) /gene="Dlx4" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..286 /gene="Dlx4" /inference="alignment:Splign:2.1.0" exon 287..474 /gene="Dlx4" /inference="alignment:Splign:2.1.0" exon 475..1629 /gene="Dlx4" /inference="alignment:Splign:2.1.0" ORIGIN
atgacctctttaccctgtccccttcctggccttggtccctccaacgttgtcttcccggacctcgcccccgcctcgtcggtagtggctgcttaccagcttggactatcccccggaaccgcagcttcccccgatttgtctttctcccagacctatggccacctcctgtcctattcctaccctgggccagcaaccccaggagactcctacctgtccagccagcaacaatccgcggcgccgtctcggccctttcaccagccgactgaacaccctcaggaactcgaagcagagtcagagaaactggcactgtccctggaaccctcccagccgtccctgaccaggaagctgcgcaagcctagaaccatctactccagcctgcagctgcaacacctgaaccagcgtttccagcatacccagtacctggccctgcccgagagagctcagctggcagcgcagcttggactcacccaaacccaggtaaagatctggtttcagaacaaacgctccaaatataagaagctcctgaaacagagctctggggagctggaagaggacttctctgggagacccccctccctgtctccccactctctaaccctcccatccatctgggatctacccaaggcaggcaccctgcctaccagtggctatgacaacagctttggtacctggtatcagcatcattccccagatgtgctggcgctgcctcagaggatgtgagtctggagggaggctggtcaggcttcagccctcctgtcaagcccaggacctgagcacctgctccccttctgggaggagaggaaaccggctccagatggattttctcagaagtcaagaagctgaaggagaaaaggaaaagaatggagtggaagcctggctctccaagctagagagctaaaccaggggatttagactgccaccatcttgccactccctcccccttcaaatgactacagccccagcacagcctaggatccaaaccaggaagaaaacaagtatcattcctggcttgcaccgtgggggtccagacagctcttccatgaacaaaactagaagtggacacagagtctctgttgttggccaccataaagtctccgatttccatttactaattattgatggtggcccagtggtagagtaagtgcttaacatgtaagaggccccagcaccaaaacaaaaacatggaaggcagttgggcctgtgggcagctcatgcatctctgtccgtccccccccccccccccccggagctggggaccgaacccagggccttgcgcttcctaggcaagcgctctgccactgagccaaatccccaaccccatgcatctctgttttaaatggctgtctaccaccttatctacccatttgatagtcatgggctcattgtaattcatcaggtacatgctaagagcctaggcctgctgctccccattcttaacacctcacaagttcacctgcacatattgtgggaggggacaaacagaacctctggatcagtgcgggcctagctgcaaaggtggggtagccttggcatctcggctcctcactgttgcctctacccaagaaactgccctgactcaccgctattctgcccggcattcccagggacttgtcagctctcaaatcccaagct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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