LOCUS       NM_001106733            1165 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 6B
            (Trappc6b), mRNA.
ACCESSION   NM_001106733 XM_001079724 XM_216708
VERSION     NM_001106733.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473947.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_216708.2, XM_001079724.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ230024.1, BG666461.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132294, SAMD00132300
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q23"
     gene            1..1165
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="trafficking protein particle complex subunit 6B"
                     /db_xref="GeneID:299075"
                     /db_xref="RGD:1309325"
     exon            1..259
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    140..142
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="upstream in-frame stop codon"
     CDS             179..655
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="trafficking protein particle complex 6B"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 6B"
                     /protein_id="NP_001100203.1"
                     /db_xref="GeneID:299075"
                     /db_xref="RGD:1309325"
                     /translation="

MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL"

     misc_feature    185..646
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="Trs33 subunit of the TRAPP complex; Region:
                     TRAPPC6A_Trs33; cd14944"
                     /db_xref="CDD:271347"
     misc_feature    order(191..193,200..202,212..214,485..490,518..520,
                     530..532)
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="synbindin interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:271347"
     misc_feature    order(194..199,203..211,215..220,227..229,281..283,
                     293..295,302..307,314..319,326..328,401..403,410..412,
                     470..472,539..541)
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /note="BET3 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271347"
     exon            260..327
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
     exon            328..445
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
     exon            446..529
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
     exon            530..623
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
     exon            624..1165
                     /gene="Trappc6b"
                     /gene_synonym="RGD1309325"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgtggggttgtcatagggtctcaaaggcccagtggcggccgccctggggaggggcgcggtccacagcggccttaggaccggggtaggccgcggcgcacagcgtgcgacgcggggtaacgggaacctcgagtcccgcactaattggagccgactcggcgctggagggatcggcgggaaatggcggacgaggcgttgtttttgcttctccataacgagatggtgtccggagtatataagtccgccgagcagggggaagtggaaaatggacggtgtattactaagctggaaaacatggggtttcgagtgggacaaggattgatagaaaggtttacaaaagatactgcaaggttcaaggatgaattagacatcatgaagttcatatgtaaagatttttggactacggtattcaagaaacaaattgacaatctaaggacaaatcatcagggcatatatgtgcttcaggacaacaaatttcgactactcattcagctgtctgcaggaaaacagtatttagaacatgcatccaagtatctagcgtttacatgtggcttaatcagaggtggcttgtcaaacttgggaataaaaagtattgtgacagctgaagtatcttcaatgcctgcctgcaaattccaggtgatgatacagaagctgtagagtgaggtgatggctcctgggcagagcattgcgcgtcctgatttcaccttctcgttggatatctgcgttggagcaaatcgttagctctccagagtcactagagcaaatcaaagtagatacaggtcctttgacataaactaactgaactgttcaaagcaatttcagtgaactaaacgccaagatgccaggctcttcattttaaacatctttatttccgtagtatgataagcatttaaccatcaattgggaagtgaaactcagggtgtgttgaattgctgtataaaaaagtacgtgtcaatcagaatagtttgtgttcaaatgaccaaaatttgttgaagtataaatctgttttagttatttaaaacaaaccactatgttaaattaagcttcatttttattgtattgcttataatttatttctgtcaagagaactcctatgcttatataaggatttcatttatacattgtgtatatatgtgtatatataaatacatgcattactgtctaaat

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