2024-05-05 00:08:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001106302 1362 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 3 (Hmx3), mRNA. ACCESSION NM_001106302 XM_001054019 XM_219327 VERSION NM_001106302.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1362) AUTHORS Wang W, Grimmer JF, Van De Water TR and Lufkin T. TITLE Hmx2 and Hmx3 homeobox genes direct development of the murine inner ear and hypothalamus and can be functionally replaced by Drosophila Hmx JOURNAL Dev Cell 7 (3), 439-453 (2004) PUBMED 15363417 REFERENCE 2 (bases 1 to 1362) AUTHORS Ozaki H, Nakamura K, Funahashi J, Ikeda K, Yamada G, Tokano H, Okamura HO, Kitamura K, Muto S, Kotaki H, Sudo K, Horai R, Iwakura Y and Kawakami K. TITLE Six1 controls patterning of the mouse otic vesicle JOURNAL Development 131 (3), 551-562 (2004) PUBMED 14695375 REFERENCE 3 (bases 1 to 1362) AUTHORS Amendt BA, Sutherland LB and Russo AF. TITLE Transcriptional antagonism between Hmx1 and Nkx2.5 for a shared DNA-binding site JOURNAL J Biol Chem 274 (17), 11635-11642 (1999) PUBMED 10206974 REFERENCE 4 (bases 1 to 1362) AUTHORS Wang W, Van De Water T and Lufkin T. TITLE Inner ear and maternal reproductive defects in mice lacking the Hmx3 homeobox gene JOURNAL Development 125 (4), 621-634 (1998) PUBMED 9435283 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473953.1. On or before Oct 4, 2007 this sequence version replaced XM_219327.4, XM_001054019.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1362 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="1" /map="1q41" gene 1..1362 /gene="Hmx3" /gene_synonym="RGD1559927" /note="H6 family homeobox 3" /db_xref="GeneID:293537" /db_xref="RGD:1559927" CDS 1..1071 /gene="Hmx3" /gene_synonym="RGD1559927" /note="H6 homeo box 3" /codon_start=1 /product="homeobox protein HMX3" /protein_id="NP_001099772.1" /db_xref="GeneID:293537" /db_xref="RGD:1559927" /translation="
MPEPGPDASGTASAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPDPLLKADPDHKELDSKSPDEIILEESDSEEGKKEGEAVPGAAGTTVGATAATPGSEDWKAGADSPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV"
misc_feature order(682..696,700..702,751..753,769..771,808..810, 814..819,826..831,835..843,847..852) /gene="Hmx3" /gene_synonym="RGD1559927" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 688..849 /gene="Hmx3" /gene_synonym="RGD1559927" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(688..690,697..699,817..819,826..831,838..840) /gene="Hmx3" /gene_synonym="RGD1559927" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..400 /gene="Hmx3" /gene_synonym="RGD1559927" /inference="alignment:Splign:2.1.0" exon 401..1362 /gene="Hmx3" /gene_synonym="RGD1559927" /inference="alignment:Splign:2.1.0" ORIGIN
atgccggagcccgggccggacgcctcgggcactgccagcgcgccgcccccgcagcctcctccccagcctcccgcgcccaaggaatccccgttctccatcaggaacctgctcaacggagaccatcaccggccgcccccgaagccacagccgcccccacgaacgctctttgcgccggcctcggccgccgccgctgcggccgccgctgccgccgccgcagccaaaggtgccctggagggtgccgcgggcttcgcgctctcgcaggtgggagacctggccttcccccgctttgagatcccagcgcagaggtttgcattgcccgcgcactacctggagcgctccccggcctggtggtacccctacaccctgacccccgccggcggccacctcccgcgaccagaagcctctgagaaggccctcctgcgcgattcctcccctgcgtccggcacagaccgcgactccccggaccctctgctcaaggctgaccccgaccacaaggagctggactccaagagcccggacgagatcattctggaagagagcgactcggaggaaggcaaaaaagaaggcgaggcggtgcctggcgcggccgggacgacagtaggggcgactgcggcgacaccgggctcagaggactggaaggcgggcgccgacagtcccgagaagaagccggcgtgccgcaaaaagaagacgcgcaccgtcttctcccgcagccaggtcttccagctcgagtccaccttcgacatgaagcgctacctgagcagctcggagcgcgccggcctggccgcgtcgcttcacctcaccgagacgcaggtcaagatctggttccagaatcgccgcaacaagtggaagcgacagctggcggccgagctggaggcggccaacctgagccacgccgctgcgcagcgcatcgtgcgcgtgcccatcctctaccacgagaactctgcggccgagggggcggcggcggccgcaggggccccggtgccggtcagccagccgctgctcaccttcccgcaccctgtctactactcgcacccggtggtctcgtctgtgccgctgctacggccggtgtgagacgggagaggggagagggaatgagcacccggccacctttcggggatcccggaggagactgggccgggccgagggtgccgggctgtggccagcgaccttgggctcactgccttgcctcccaccccccaatagcattttgtaagtatttgcaatgcattttcgtgcaattcattcctatgaatttgaggcgcttctcctcttatttttggttttgctttccattaagagaaaacgaggtggggttgggagggaacgacaaaataaccaggtcaaaacttccaattgaaagtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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