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2024-03-29 20:18:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001106274            2289 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus retinaldehyde binding protein 1 (Rlbp1), mRNA.
ACCESSION   NM_001106274 XM_001064754 XM_006229396 XM_214973
VERSION     NM_001106274.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Daiger SP, Sullivan LS and Bowne SJ.
  TITLE     Genes and mutations causing retinitis pigmentosa
  JOURNAL   Clin Genet 84 (2), 132-141 (2013)
   PUBMED   23701314
  REMARK    Review article
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   von Lintig J, Kiser PD, Golczak M and Palczewski K.
  TITLE     The biochemical and structural basis for trans-to-cis isomerization
            of retinoids in the chemistry of vision
  JOURNAL   Trends Biochem Sci 35 (7), 400-410 (2010)
   PUBMED   20188572
  REMARK    Review article
REFERENCE   3  (bases 1 to 2289)
  AUTHORS   Wright AF, Chakarova CF, Abd El-Aziz MM and Bhattacharya SS.
  TITLE     Photoreceptor degeneration: genetic and mechanistic dissection of a
            complex trait
  JOURNAL   Nat Rev Genet 11 (4), 273-284 (2010)
   PUBMED   20212494
  REMARK    Review article
REFERENCE   4  (bases 1 to 2289)
  AUTHORS   Huang J, Possin DE and Saari JC.
  TITLE     Localizations of visual cycle components in retinal pigment
            epithelium
  JOURNAL   Mol Vis 15, 223-234 (2009)
   PUBMED   19180257
REFERENCE   5  (bases 1 to 2289)
  AUTHORS   Katsanis N, Shroyer NF, Lewis RA, Cavender JC, Al-Rajhi AA, Jabak M
            and Lupski JR.
  TITLE     Fundus albipunctatus and retinitis punctata albescens in a pedigree
            with an R150Q mutation in RLBP1
  JOURNAL   Clin Genet 59 (6), 424-429 (2001)
   PUBMED   11453974
REFERENCE   6  (bases 1 to 2289)
  AUTHORS   Burstedt MS, Forsman-Semb K, Golovleva I, Janunger T, Wachtmeister
            L and Sandgren O.
  TITLE     Ocular phenotype of bothnia dystrophy, an autosomal recessive
            retinitis pigmentosa associated with an R234W mutation in the RLBP1
            gene
  JOURNAL   Arch Ophthalmol 119 (2), 260-267 (2001)
   PUBMED   11176989
REFERENCE   7  (bases 1 to 2289)
  AUTHORS   Maw MA, Kennedy B, Knight A, Bridges R, Roth KE, Mani EJ, Mukkadan
            JK, Nancarrow D, Crabb JW and Denton MJ.
  TITLE     Mutation of the gene encoding cellular retinaldehyde-binding
            protein in autosomal recessive retinitis pigmentosa
  JOURNAL   Nat Genet 17 (2), 198-200 (1997)
   PUBMED   9326942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000040.1.
            
            On or before Jun 4, 2021 this sequence version replaced
            XM_006229396.4, NM_001106274.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMD00132262,
                              SAMD00132267 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               JACYVU010000040.1  802550-802907       c
            359-469             JACYVU010000040.1  800767-800877       c
            470-498             JACYVU010000040.1  800055-800083       c
            499-627             JACYVU010000040.1  799747-799875       c
            628-832             JACYVU010000040.1  797301-797505       c
            833-1011            JACYVU010000040.1  795121-795299       c
            1012-1170           JACYVU010000040.1  792060-792218       c
            1171-1281           JACYVU010000040.1  790734-790844       c
            1282-2289           JACYVU010000040.1  789548-790555       c
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..2289
                     /gene="Rlbp1"
                     /note="retinaldehyde binding protein 1"
                     /db_xref="GeneID:293049"
                     /db_xref="RGD:1309649"
     exon            1..358
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            359..469
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    433..435
                     /gene="Rlbp1"
                     /note="upstream in-frame stop codon"
     exon            470..498
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             487..1440
                     /gene="Rlbp1"
                     /codon_start=1
                     /product="retinaldehyde-binding protein 1"
                     /protein_id="NP_001099744.1"
                     /db_xref="GeneID:293049"
                     /db_xref="RGD:1309649"
                     /translation="
MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRDEAVRELQELVQAQAASGEELAVAVAERVQARDSAFLLRFIRARKFDVGRAYELLKGYVNFRLQYPELFDSLSMEALRCTIEAGYPGVLSSRDKYGRVVMLFNIENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQQAAGLRPSDLKKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEIDENILPADFGGTLPKYDGKVVAEQLFGPRVEVENTAL"
     misc_feature    664..837
                     /gene="Rlbp1"
                     /note="CRAL/TRIO, N-terminal domain; Region: CRAL_TRIO_N;
                     smart01100"
                     /db_xref="CDD:215024"
     misc_feature    913..1359
                     /gene="Rlbp1"
                     /note="CRAL/TRIO domain; Region: CRAL_TRIO; pfam00650"
                     /db_xref="CDD:425800"
     misc_feature    order(955..957,961..963,967..969,1045..1047,1090..1092,
                     1096..1098,1144..1146,1156..1158,1168..1170,1180..1182,
                     1189..1191,1198..1200,1204..1206,1225..1227,1246..1248,
                     1282..1284)
                     /gene="Rlbp1"
                     /note="phospholipid binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:238099"
     misc_feature    order(1183..1185,1279..1281)
                     /gene="Rlbp1"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238099"
     exon            499..627
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            628..832
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            833..1011
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1170
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1281
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..2289
                     /gene="Rlbp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
tcccaggctcccctgcctcccagtttgagaagagagagggcaggaaaatgagacggggctggcccagatcccagtgaagtagcttccacatggccgaacagagctccaagcaggagctcacaaagcagggctttgatggtggccctgcaggcccggcctctcccctctccctcagggtgcttcgcttggttcattctgggcctcccgtgagcctgattgaatgggaaacggtgggcctgagaagttccttgtgacaagctaatcccagcttgctgacctgaccacacctccaaaggaaacagcctcccgagctccagaacaattcaggcacccagtagccccaagaaagagctatcagggacggtcaaggctcgggtgaaatcacacagcttgcaagacaggattggaatccaagtcccatatcctgttccttagccgcttcttggtgcctacagaagtcacagcttagtgtcttcaagaggcagtatgtcagagggggtgggcacattccgaatggtccctgaagaggagcaggagctccgggcacagctagaacagctcacaaccaaggatcatggtcctgtctttggcccatgcagccagctgccccgccacactttgcagaaggctaaggatgagctgaatgaaagggaggaaacccgggatgaggcggtgagggagctacaggagctggtccaggcacaggcagcttctggggaagagttggccgtggcagtggctgagagggtgcaggcaagagacagcgccttcctcctgcgcttcatccgtgcccgaaagtttgatgtgggccgggcttatgagctgctcaaaggctatgtgaacttccggctccagtaccctgaactcttcgatagcctatctatggaggctctccgctgcactatcgaggccggttaccctggtgtcctttccagtcgggacaagtatggtcgagtggttatgctcttcaacattgaaaactggcactgtgaagaagtcacctttgatgagatcttacaggcatattgtttcattctggagaaactgctggagaacgaggaaacccaaatcaacggcttctgtattgtggagaacttcaagggcttcaccatgcagcaggccgcgggactccgcccctccgatctcaagaagatggtggacatgctccaggattcattcccagccaggttcaaagctatccacttcatccaccaaccatggtacttcaccaccacttacaatgtggtcaagcccttcttgaagaacaagttgctacagagggtcttcgttcatggagatgacctggacggcttcttccaggagattgatgagaatatcttgcctgctgactttgggggtacactgcccaagtatgacggcaaagttgtcgctgagcagctcttcggtccccgggttgaggttgagaacacagccttgtgaggagatgccctaccatgtgatcctcattagcatcccggcccttcctcagctttcctgaacccaaaacagggaacggaacgcctgaggtgactggtttccccagccttccctaggtttaggaccgctctagtggcatctcatcccaaaccgacctagaggacagtgaggcacaggcatgtctttttttttttttttttttttcctccatttttcttttcttcggagatggggaccgaacccaggaccttgcgcttgctaggcaagcgctctaccactgagctaaatccccaaccccacaggcatgtctttaataggagacttgtggggcagctaaattcccatcagcctttgcggttacagggcaatgactttgagagaagttaggatttcacagactaattaggtggcttctccgtgattgtctttgtaatcgctttgatacttagggtgtgaaggtgagtgagaagcttacttgcaattcagttaaaaaaagaaagagaggggcttaaagctctaatgatcttagcagcagtgggcagataaggggtttcccacctaagattccagggagggagtagcagccttagaacagttgtatttggggctgacttgcggatgaacgccctgcggatgaacgccctcgtagctaagagctctggactctgtccagggtagaagtcacgtcccttcctctccatccaccgtaggtgtgatttttggggccagggctcccattcactagatgctgtttgctttgttggatggtcttacttaaatgcacctttgacattgtccccagacactcttagtccttattagacaaataaaaccgttctttgtcttgtgtca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]