2024-03-29 20:18:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001106274 2289 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus retinaldehyde binding protein 1 (Rlbp1), mRNA. ACCESSION NM_001106274 XM_001064754 XM_006229396 XM_214973 VERSION NM_001106274.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2289) AUTHORS Daiger SP, Sullivan LS and Bowne SJ. TITLE Genes and mutations causing retinitis pigmentosa JOURNAL Clin Genet 84 (2), 132-141 (2013) PUBMED 23701314 REMARK Review article REFERENCE 2 (bases 1 to 2289) AUTHORS von Lintig J, Kiser PD, Golczak M and Palczewski K. TITLE The biochemical and structural basis for trans-to-cis isomerization of retinoids in the chemistry of vision JOURNAL Trends Biochem Sci 35 (7), 400-410 (2010) PUBMED 20188572 REMARK Review article REFERENCE 3 (bases 1 to 2289) AUTHORS Wright AF, Chakarova CF, Abd El-Aziz MM and Bhattacharya SS. TITLE Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait JOURNAL Nat Rev Genet 11 (4), 273-284 (2010) PUBMED 20212494 REMARK Review article REFERENCE 4 (bases 1 to 2289) AUTHORS Huang J, Possin DE and Saari JC. TITLE Localizations of visual cycle components in retinal pigment epithelium JOURNAL Mol Vis 15, 223-234 (2009) PUBMED 19180257 REFERENCE 5 (bases 1 to 2289) AUTHORS Katsanis N, Shroyer NF, Lewis RA, Cavender JC, Al-Rajhi AA, Jabak M and Lupski JR. TITLE Fundus albipunctatus and retinitis punctata albescens in a pedigree with an R150Q mutation in RLBP1 JOURNAL Clin Genet 59 (6), 424-429 (2001) PUBMED 11453974 REFERENCE 6 (bases 1 to 2289) AUTHORS Burstedt MS, Forsman-Semb K, Golovleva I, Janunger T, Wachtmeister L and Sandgren O. TITLE Ocular phenotype of bothnia dystrophy, an autosomal recessive retinitis pigmentosa associated with an R234W mutation in the RLBP1 gene JOURNAL Arch Ophthalmol 119 (2), 260-267 (2001) PUBMED 11176989 REFERENCE 7 (bases 1 to 2289) AUTHORS Maw MA, Kennedy B, Knight A, Bridges R, Roth KE, Mani EJ, Mukkadan JK, Nancarrow D, Crabb JW and Denton MJ. TITLE Mutation of the gene encoding cellular retinaldehyde-binding protein in autosomal recessive retinitis pigmentosa JOURNAL Nat Genet 17 (2), 198-200 (1997) PUBMED 9326942 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000040.1. On or before Jun 4, 2021 this sequence version replaced XM_006229396.4, NM_001106274.1. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00132262, SAMD00132267 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-358 JACYVU010000040.1 802550-802907 c 359-469 JACYVU010000040.1 800767-800877 c 470-498 JACYVU010000040.1 800055-800083 c 499-627 JACYVU010000040.1 799747-799875 c 628-832 JACYVU010000040.1 797301-797505 c 833-1011 JACYVU010000040.1 795121-795299 c 1012-1170 JACYVU010000040.1 792060-792218 c 1171-1281 JACYVU010000040.1 790734-790844 c 1282-2289 JACYVU010000040.1 789548-790555 c FEATURES Location/Qualifiers source 1..2289 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="1" /map="1q31" gene 1..2289 /gene="Rlbp1" /note="retinaldehyde binding protein 1" /db_xref="GeneID:293049" /db_xref="RGD:1309649" exon 1..358 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 359..469 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" misc_feature 433..435 /gene="Rlbp1" /note="upstream in-frame stop codon" exon 470..498 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" CDS 487..1440 /gene="Rlbp1" /codon_start=1 /product="retinaldehyde-binding protein 1" /protein_id="NP_001099744.1" /db_xref="GeneID:293049" /db_xref="RGD:1309649" /translation="
MSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEREETRDEAVRELQELVQAQAASGEELAVAVAERVQARDSAFLLRFIRARKFDVGRAYELLKGYVNFRLQYPELFDSLSMEALRCTIEAGYPGVLSSRDKYGRVVMLFNIENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQQAAGLRPSDLKKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEIDENILPADFGGTLPKYDGKVVAEQLFGPRVEVENTAL"
misc_feature 664..837 /gene="Rlbp1" /note="CRAL/TRIO, N-terminal domain; Region: CRAL_TRIO_N; smart01100" /db_xref="CDD:215024" misc_feature 913..1359 /gene="Rlbp1" /note="CRAL/TRIO domain; Region: CRAL_TRIO; pfam00650" /db_xref="CDD:425800" misc_feature order(955..957,961..963,967..969,1045..1047,1090..1092, 1096..1098,1144..1146,1156..1158,1168..1170,1180..1182, 1189..1191,1198..1200,1204..1206,1225..1227,1246..1248, 1282..1284) /gene="Rlbp1" /note="phospholipid binding pocket [chemical binding]; other site" /db_xref="CDD:238099" misc_feature order(1183..1185,1279..1281) /gene="Rlbp1" /note="salt bridge; other site" /db_xref="CDD:238099" exon 499..627 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 628..832 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 833..1011 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 1012..1170 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 1171..1281 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" exon 1282..2289 /gene="Rlbp1" /inference="alignment:Splign:2.1.0" ORIGIN
tcccaggctcccctgcctcccagtttgagaagagagagggcaggaaaatgagacggggctggcccagatcccagtgaagtagcttccacatggccgaacagagctccaagcaggagctcacaaagcagggctttgatggtggccctgcaggcccggcctctcccctctccctcagggtgcttcgcttggttcattctgggcctcccgtgagcctgattgaatgggaaacggtgggcctgagaagttccttgtgacaagctaatcccagcttgctgacctgaccacacctccaaaggaaacagcctcccgagctccagaacaattcaggcacccagtagccccaagaaagagctatcagggacggtcaaggctcgggtgaaatcacacagcttgcaagacaggattggaatccaagtcccatatcctgttccttagccgcttcttggtgcctacagaagtcacagcttagtgtcttcaagaggcagtatgtcagagggggtgggcacattccgaatggtccctgaagaggagcaggagctccgggcacagctagaacagctcacaaccaaggatcatggtcctgtctttggcccatgcagccagctgccccgccacactttgcagaaggctaaggatgagctgaatgaaagggaggaaacccgggatgaggcggtgagggagctacaggagctggtccaggcacaggcagcttctggggaagagttggccgtggcagtggctgagagggtgcaggcaagagacagcgccttcctcctgcgcttcatccgtgcccgaaagtttgatgtgggccgggcttatgagctgctcaaaggctatgtgaacttccggctccagtaccctgaactcttcgatagcctatctatggaggctctccgctgcactatcgaggccggttaccctggtgtcctttccagtcgggacaagtatggtcgagtggttatgctcttcaacattgaaaactggcactgtgaagaagtcacctttgatgagatcttacaggcatattgtttcattctggagaaactgctggagaacgaggaaacccaaatcaacggcttctgtattgtggagaacttcaagggcttcaccatgcagcaggccgcgggactccgcccctccgatctcaagaagatggtggacatgctccaggattcattcccagccaggttcaaagctatccacttcatccaccaaccatggtacttcaccaccacttacaatgtggtcaagcccttcttgaagaacaagttgctacagagggtcttcgttcatggagatgacctggacggcttcttccaggagattgatgagaatatcttgcctgctgactttgggggtacactgcccaagtatgacggcaaagttgtcgctgagcagctcttcggtccccgggttgaggttgagaacacagccttgtgaggagatgccctaccatgtgatcctcattagcatcccggcccttcctcagctttcctgaacccaaaacagggaacggaacgcctgaggtgactggtttccccagccttccctaggtttaggaccgctctagtggcatctcatcccaaaccgacctagaggacagtgaggcacaggcatgtctttttttttttttttttttttcctccatttttcttttcttcggagatggggaccgaacccaggaccttgcgcttgctaggcaagcgctctaccactgagctaaatccccaaccccacaggcatgtctttaataggagacttgtggggcagctaaattcccatcagcctttgcggttacagggcaatgactttgagagaagttaggatttcacagactaattaggtggcttctccgtgattgtctttgtaatcgctttgatacttagggtgtgaaggtgagtgagaagcttacttgcaattcagttaaaaaaagaaagagaggggcttaaagctctaatgatcttagcagcagtgggcagataaggggtttcccacctaagattccagggagggagtagcagccttagaacagttgtatttggggctgacttgcggatgaacgccctgcggatgaacgccctcgtagctaagagctctggactctgtccagggtagaagtcacgtcccttcctctccatccaccgtaggtgtgatttttggggccagggctcccattcactagatgctgtttgctttgttggatggtcttacttaaatgcacctttgacattgtccccagacactcttagtccttattagacaaataaaaccgttctttgtcttgtgtca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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