LOCUS       NM_001105977            2604 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus EF-hand calcium binding domain 2 (Efcab2), mRNA.
ACCESSION   NM_001105977 XM_001059936 XM_213950
VERSION     NM_001105977.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473985.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_213950.3, XM_001059936.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AW916511.1, SRR8487226.217727.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132291
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q25-q26"
     gene            1..2604
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /note="EF-hand calcium binding domain 2"
                     /db_xref="GeneID:289280"
                     /db_xref="RGD:1308593"
     exon            1..256
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    190..192
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /note="upstream in-frame stop codon"
     CDS             226..642
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /note="EF-hand calcium-binding domain-containing protein
                     2; EF-hand calcium-binding domain-containing protein
                     2-like"
                     /codon_start=1
                     /product="dynein regulatory complex protein 8"
                     /protein_id="NP_001099447.1"
                     /db_xref="GeneID:289280"
                     /db_xref="RGD:1308593"
                     /translation="

MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN"

     misc_feature    <355..639
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; Region: FRQ1; COG5126"
                     /db_xref="CDD:227455"
     exon            257..336
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
     exon            337..416
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
     exon            417..459
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
     exon            460..526
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
     exon            527..2604
                     /gene="Efcab2"
                     /gene_synonym="RGD1308593"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ataaacaaacaaggcaccctacgtccttgacagtcgcaaccaggccaaggccggctcggggccttattaataaatgactcccctaggcccaaagaacgccggcctcagttcttggggggttgggagacggccaccgcgcgtcgaggggcttcctccgcctcgtccccctcgcgcggcccgcagggtttgtgatgggatctcccaggcgacgggctccgcaccaagatggcggaggaaaaggacccggagagtacagaggcaatagtggcagaacttcataagaagatcaaagaggcgtttgaagtgtttgaccatgaatcgaataatacagtagatgtagaggaagaagaacccactgggtacattcgatttgaaaaatttattccagtgatgaccacagtacttctagaaaaaagatacagaccaattgctgaagatgtccttttgcgagctttcgaggttttggatccaactaaacgtgggtttctgactaaggatgaactagtcaagtacatgactgaggaaggcgagcctttttcccaagaggaaatggaagaaatgttgtctgctgcaattgatcctgaatcaaacaccattaattacagagactacataacaatgatggtgatagatgaaaattaaatgctccaaagacttcttttttctccttttaagacaactgtaaacattcaatttctaattgaaaagatactttgaaaaattgtcctaatttttacattttatcttaaaatttctatatttagtgtctcatgatataattgtttcaaggtattttgtttactagagatgatcaatttaaaacataaattttttagatgaccagctttatggacagacaagttgattatttaaaaggaattatacagtattttaatgttaagtgcatccttgctcatttttcccaacgaggccaatgatacattgaaattaattagacagaaaatagagattgatcctaaccccccaagatttgccatagaaagcttttgcagggcaggatggccacagactagatgtgagtggcagtgtggtgatggctcctttcagagcagcagtaaacacttcagcaggcagaatatggagggagagcaactggaataactattaataattgatttcttatgaatgccaattacaaatctcatttgagagtctaataacttggggtaaaattgaaaattgctcatccagcatgttgccatttatggagtagttgaaggaggtgaggtaattgaatccagagagaggaagactgaatggaaacagagaatggcaactccttttttgttctttacaattctcacctattcagaatatctgtcttgggagtattgtcctgggtactgagtgtattcatctgttgttaccggaatgtagtatctgaaaggcactgactcccaaagaaagcagttcaattagctcccagttatagatggtcaaggtccaggcagcattgtgcaggctgagcgagggccacccttgcatgcacctcaccaaggtgcagctagacagacagaagcacgtggtggtgcaagcaagagcagggaggctgggagggagggccaggcctgctccttttacaatggtcctctcataagaattacttttcaggctagggagatggctcaagggataacgtatttgctgagtgtcattagataacgtgctggaagctggagatgagagatggataagcttctaattaatcaaggtcacagtttactgagggaggcttgcaagtcaatcagcaaccacacattcaggggactgaaggttacacaaaagaagcaagagtcagcctggtgggggtgaggatgggggtgagggtgctttctggtgggcagactcaaagaggtagtaacacatgtcttagaaacttagtagttcttaagttttgacagtcattctttgagcagtttacttcagagcatgtcagcagcaggacagcagatcaaacccccagaggtgtcatgaaacacaagaatctgggaaatgaaagtatggttcctagatatttggaacctgatgagagatgagaggtcggagtgggagacagcaaccatatgctcagagataatgggctaattggggttaaggtttctgtgtttgaacgtgaacttgattctgaaaaatcagagaaaggagttggagttgtaaatagtctgagaaatcctgtgaaggtcaagaccagaggcgggagaccagctggtaggcggcttggttggcagtaagagctgggctaggggaagtcaagcacaagtcctcctaagtttctgcctggagcacttggtaagtgatggtggcagccattcggataagatgcccaaggcttgggctgctaagctcgactgtggtcctctctggcttaagaactggtgggagggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaagaaccaaaaaaaaaaaaaaaaaaaaaagaactggtgggagatagaaagatcaactggataaataaggggacatctgtgagagacatgggctttgaagttgtcagcatgtggtgtcctgg

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