2024-04-20 14:13:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001100813 3480 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus claudin 12 (Cldn12), mRNA. ACCESSION NM_001100813 XM_001067932 XM_575355 VERSION NM_001100813.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3480) AUTHORS Castro Dias M, Coisne C, Baden P, Enzmann G, Garrett L, Becker L, Holter SM, Hrabe de Angelis M, Deutsch U and Engelhardt B. CONSRTM German Mouse Clinic Consortium TITLE Claudin-12 is not required for blood-brain barrier tight junction function JOURNAL Fluids Barriers CNS 16 (1), 30 (2019) PUBMED 31511021 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3480) AUTHORS Berndt P, Winkler L, Cording J, Breitkreuz-Korff O, Rex A, Dithmer S, Rausch V, Blasig R, Richter M, Sporbert A, Wolburg H, Blasig IE and Haseloff RF. TITLE Tight junction proteins at the blood-brain barrier: far more than claudin-5 JOURNAL Cell Mol Life Sci 76 (10), 1987-2002 (2019) PUBMED 30734065 REFERENCE 3 (bases 1 to 3480) AUTHORS Wang J, Chen J, Tang Z, Li Y, Hu L and Pan J. TITLE The Effects of Copper on Brain Microvascular Endothelial Cells and Claudin Via Apoptosis and Oxidative Stress JOURNAL Biol Trace Elem Res 174 (1), 132-141 (2016) PUBMED 27038183 REMARK GeneRIF: identified four claudin isoforms (1, 3, 5, and 12) and showed that their expression levels were regulated as a group by copper REFERENCE 4 (bases 1 to 3480) AUTHORS Harris HJ, Davis C, Mullins JG, Hu K, Goodall M, Farquhar MJ, Mee CJ, McCaffrey K, Young S, Drummer H, Balfe P and McKeating JA. TITLE Claudin association with CD81 defines hepatitis C virus entry JOURNAL J Biol Chem 285 (27), 21092-21102 (2010) PUBMED 20375010 REFERENCE 5 (bases 1 to 3480) AUTHORS Friedman LM, Dror AA, Mor E, Tenne T, Toren G, Satoh T, Biesemeier DJ, Shomron N, Fekete DM, Hornstein E and Avraham KB. TITLE MicroRNAs are essential for development and function of inner ear hair cells in vertebrates JOURNAL Proc Natl Acad Sci U S A 106 (19), 7915-7920 (2009) PUBMED 19416898 REFERENCE 6 (bases 1 to 3480) AUTHORS Krause G, Winkler L, Mueller SL, Haseloff RF, Piontek J and Blasig IE. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 7 (bases 1 to 3480) AUTHORS Fujita H, Chiba H, Yokozaki H, Sakai N, Sugimoto K, Wada T, Kojima T, Yamashita T and Sawada N. TITLE Differential expression and subcellular localization of claudin-7, -8, -12, -13, and -15 along the mouse intestine JOURNAL J Histochem Cytochem 54 (8), 933-944 (2006) PUBMED 16651389 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC111647.10 and BP465177.1. On or before Aug 9, 2007 this sequence version replaced XM_575355.2, XM_001067932.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR8487231.88334.1, SRR8487231.161489.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-53 AC111647.10 103268-103320 54-2965 AC111647.10 105998-108909 2966-3480 BP465177.1 1-515 c FEATURES Location/Qualifiers source 1..3480 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="4" /map="4q13" gene 1..3480 /gene="Cldn12" /gene_synonym="RGD1561053" /note="claudin 12" /db_xref="GeneID:500000" /db_xref="RGD:1561053" exon 1..53 /gene="Cldn12" /gene_synonym="RGD1561053" /inference="alignment:Splign:2.1.0" misc_feature 47..49 /gene="Cldn12" /gene_synonym="RGD1561053" /note="upstream in-frame stop codon" exon 54..3479 /gene="Cldn12" /gene_synonym="RGD1561053" /inference="alignment:Splign:2.1.0" CDS 83..817 /gene="Cldn12" /gene_synonym="RGD1561053" /codon_start=1 /product="claudin-12" /protein_id="NP_001094283.1" /db_xref="GeneID:500000" /db_xref="RGD:1561053" /translation="
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTIYTGLWVKCARYDGSSDCLMYDRTWYLSVDQLDLRVLQFALPLSILIAMGALLLCLIGMCNTAFKSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWAIFYNSHLNKKFEPVFTFDYAVFVTIASSGGLFMTALLLFVWYCACKSLSSPFWQPLYSHPPGMHTYSQPYSSRSRLSAIEIDIPVVSHST"
ORIGIN
gaatcagtggcataggacaggctgtttggagaaacactgattattttgaaattacgaaacacactgcccaagccctcctgccatgggctgccgagatgtccatgcagccacggtcctctccttcctgtgcggcattgcctctgtagcaggcctcttcgcggggactctgcttcccaactggaggaagctgcgactcatcacattcaacagaaatgagaagaacctgacgatctacacgggcctgtgggtgaagtgcgcccggtatgacggaagcagtgactgcctgatgtacgaccgcacttggtacctgtcggtcgaccagctggacctgcgcgtcctccagttcgccctgcccctcagcatcctgatcgcaatgggtgccttgctgctctgcctgattgggatgtgcaacacggccttcaagtcttcggtgcctaacatcaaactggccaagtgtctggtcaatagtgcaggctgccacctggtggctggactcctgtttttcctggcaggtaccgtgagcctctctccatccatctgggccatcttctataacagccatctcaacaagaagttcgagccggtctttacctttgactatgcagtgtttgtcacgatcgctagctcagggggtctgttcatgactgctcttctgctgtttgtttggtactgtgcatgcaagtctttgtcctctcctttctggcagccactgtactcccatcctcctgggatgcacacttactcacagccctattcatcacggtcccgcctctctgccattgaaattgacattccggtagtttcacatagcacttaacagttataattaactgctcaaagtgtgtctggtagcctcacagccccctgcataacgagcctttttggacctgtgtacatttttcctttgttccttacccatcagtggagccgcatttgtatatcttggtagaaaggaaggctgctagactttatgaggtacatggttcattcttctaaatgtgaaacattccttttatcttgcttctaagaccaagggtctttggcctccttgttgatgtctgtgatcagtcacttaggtgagagggcctgtgataacgactgaggcaatgaagacggcatactgagcaatgctgtttgatccttaccgatatttcagattgtgcatcgtctccgatgacttaaaagtgaaaggggcagtttcagatttcaggagtctcggtcagatacggctagtgcttgtcttcacactctaccagcctgaaggtataatttcgttctctcttgggactaatcgagtagggcatctgtatactgaagattagtatcttctacctcatttcagtgaaaagcagaacgtggcttaaatgatgacagagtaaggctaacatttaaacacagttaacgtttgacttctttgttggtttcacgtagggtcttgctgtgtagccctggctggcctagaactcactctgtagaccagtctggactcacacgtgaccgttctccagcttgcctcctgagcactaactaccggcatgccccactcttgtgtaacaccccgtaagttttagttactgattatatcgccggagttaaaaggctgtcaggagacagcatgtcgcttcattcaaagcaagaatccctttccagatacccttccttcaggtagtgctcatgccctgggcaagctcttagtgcctaagacaaatgaataaaaggttgttgaagccaaatggttgtcttttagacacaaatgctagggcacaggaggctgtcggtcagtgtcagcgccaaagattcatttggtggctcctatttgagttgtggctttgctctgttcagtttctgcttctaacactgcttcacacttgagcaagtgctttagaggatacacaaacaggagaagtagccatgtaggagttttgctctaacacacctgataaccagtgggaagtctgactttacggtagctggtaaacttcaggcattgactgaggaatgtgtttcacctgaaacatgtctttctgacacagccaacctacgtacaccaccagcggtagcctggactctgggaattcactttagtatgtctcctcccgtagctcacaagctgtaataacggcctcagatcatgagaatgggcgagataggagagagattaaattatacctgttctacctctgaaactaagatgagatattaaagagggataagttttaaaaatatctcttccgatgtgacgtcaaatggataaaaccatttagtactaacctcccactttgacattgagagatgttgggtcttaactattaggaatttgagctggtcactaattggtatgatgtccacttactagcgttgtgttttgtaaggattgtggaatattacagtcaagagttttttacaagcagctgattttacggtaacagtctatgatgccacctttccaaatctgagtatttctgtagaatatgtagtacttttccctaagtccaacactactactttatgtaggcaagtaaatccaattgtataatttttaaaaaccgtcagtacaaagcatgcatttctatgtgttttttgtttaaattatggcttctagtcttttccacctccgccttttctcattcataagtaaagctgagtgttggtcctgttgaagttttgagattaatactagttttcttcccttttattaactaatcttagttcttctctcactaaactgttttcagaaagattaaaaatcccgccatgccttggcgttagtataaagagataaaagcagggccaggtgtagtggcttttgactttaccaccagcactgaggaggccgagacaggtgcatctctggaaattccggtctccatggcaagttccaagccagtcagagccacacagaaagaccctgtcttaaaaacaaaattagggaaagaaaaaaaaaagtggactcagccatgaggacactagacagttttcagctcacaggattgtaactacaggcattaagctttcttatgagaattttttggcattaccatccatagcctccaattactgcttattacaaattcgctcaggaagagaaacagctgtttcagtattatctttttagtgttccagattgggcataaatagtgctttttagagccatcaaaggaaagcatgtatttacaatccttctgagtcactgccggggctgttcttcagatggggtgggtaacgtcttttgttgctaaaaagctgttggttttgaaggccttccatggagccagtgtgtcagacaaccttgaatgtgagatggcgcagcaagtctgtgtcacccacctttgggagaagagtaagcctaagatcccaagttcactctgcgtgtacatacgccctgtgatggatagcgtgtgctgtaaaccacaaggtagagacctcagtgggtgtgctgtgctgctgcctcacgtttattaaaagatgtatttttacaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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