2024-05-04 19:04:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001024873 864 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus Rhox homeobox family member 11 (Rhox11), mRNA. ACCESSION NM_001024873 XM_233320 VERSION NM_001024873.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 864) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000455.1. On Sep 1, 2022 this sequence version replaced NM_001024873.1. ##Evidence-Data-START## Transcript exon combination :: DQ058658.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760389 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-568 JACYVU010000455.1 1828630-1829197 569-614 JACYVU010000455.1 1833427-1833472 615-864 JACYVU010000455.1 1836848-1837097 FEATURES Location/Qualifiers source 1..864 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="X" /map="Xq35" gene 1..864 /gene="Rhox11" /note="Rhox homeobox family member 11" /db_xref="GeneID:298346" /db_xref="RGD:1564332" exon 1..568 /gene="Rhox11" /inference="alignment:Splign:2.1.0" misc_feature 177..179 /gene="Rhox11" /note="upstream in-frame stop codon" CDS 192..839 /gene="Rhox11" /note="reproductive homeobox on X chromosome 11; reproductive homeobox 11" /codon_start=1 /product="Rhox homeobox family member 11" /protein_id="NP_001020044.1" /db_xref="GeneID:298346" /db_xref="RGD:1564332" /translation="
MARKYFYFDYDYYGVSFYEEEITTEPQERVAYTANKGGFTDEVTDLLKELLYQGGRSTIVEHSYRGCDMSNIQDTEHEPEETRNADETSEQLLFRIPRKPYKFTPGQLWEMQAVFEETQYPDAFRRKELAELMNVDEQKVKDWFNNKRAKLRKIQREILKGKIITPTQDELRMKTLVESKNVIIFQEQVGDGLFWDHQNFDTRAVQDSPISLLFL"
misc_feature 480..656 /gene="Rhox11" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(480..494,498..500,549..551,567..569,606..608, 612..617,624..629,633..641,645..650) /gene="Rhox11" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(486..488,495..497,615..617,624..629,636..638) /gene="Rhox11" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 569..614 /gene="Rhox11" /inference="alignment:Splign:2.1.0" exon 615..864 /gene="Rhox11" /inference="alignment:Splign:2.1.0" ORIGIN
ctcacccaggtttgtaagttgaaaatcaatagcttcggtggagggggacacgtgtccgtgtcagagaggaacgtgtgccgcctagggtcacaattttagtctggagaacccggacagctcctcagagggcttcaaggagcagagcctctctctagaagccacaagggtgcgccttctgaggagcacaggtcatggcccgtaagtacttctacttcgactacgactactatggggtgagcttctatgaggaagaaatcactactgaaccccaggaaagggtggcctacacagcaaacaagggcggctttaccgacgaagtaacagacctcctgaaagagctgttatatcagggcggtcggagcactatagtcgaacatagttaccgaggttgtgacatgagtaacattcaggacactgagcacgaaccagaggagaccaggaacgcggatgagaccagtgagcagttattattcaggattcctcggaaaccatacaaattcacgcctggacagctgtgggaaatgcaggcagtgttcgaagaaactcagtacccagatgccttcagacgaaaagagctggcagagctcatgaatgtggatgaacagaaagtaaaggattggttcaacaataagagagctaaacttaggaagattcagagggaaatactaaagggaaagataatcactcctacccaggacgaacttcgcatgaagactttggtggagtccaagaatgtcatcattttccaggagcaagtgggggatgggctcttctgggatcaccagaactttgacacccgtgctgtccaggacagccctatctcccttctctttctttagcaatagagtacagcattatcccttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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