2024-04-29 14:41:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001024328 1297 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus GTPase, IMAP family member 7 (Gimap7), mRNA. ACCESSION NM_001024328 XM_575465 VERSION NM_001024328.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1297) AUTHORS Schwefel D, Arasu BS, Marino SF, Lamprecht B, Kochert K, Rosenbaum E, Eichhorst J, Wiesner B, Behlke J, Rocks O, Mathas S and Daumke O. TITLE Structural insights into the mechanism of GTPase activation in the GIMAP family JOURNAL Structure 21 (4), 550-559 (2013) PUBMED 23454188 REFERENCE 2 (bases 1 to 1297) AUTHORS Dion C, Carter C, Hepburn L, Coadwell WJ, Morgan G, Graham M, Pugh N, Anderson G, Butcher GW and Miller JR. TITLE Expression of the Ian family of putative GTPases during T cell development and description of an Ian with three sets of GTP/GDP-binding motifs JOURNAL Int Immunol 17 (9), 1257-1268 (2005) PUBMED 16103028 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CV075794.1 and BC091210.1. On Oct 1, 2005 this sequence version replaced NM_001024328.1. ##Evidence-Data-START## Transcript exon combination :: FQ232730.1, DQ125348.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5756307, SAMEA5760383 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-54 CV075794.1 1-54 55-1297 BC091210.1 1-1243 FEATURES Location/Qualifiers source 1..1297 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="4" /map="4q24" gene 1..1297 /gene="Gimap7" /gene_synonym="Ian3" /note="GTPase, IMAP family member 7" /db_xref="GeneID:500113" /db_xref="RGD:1565750" exon 1..73 /gene="Gimap7" /gene_synonym="Ian3" /inference="alignment:Splign:2.1.0" exon 74..1271 /gene="Gimap7" /gene_synonym="Ian3" /inference="alignment:Splign:2.1.0" CDS 111..992 /gene="Gimap7" /gene_synonym="Ian3" /codon_start=1 /product="GTPase, IMAP family member 7" /protein_id="NP_001019499.1" /db_xref="GeneID:500113" /db_xref="RGD:1565750" /translation="
MAELDDDSLRIVLVGKTGSGKSATANTILGQKIFTSRIAPHAVTQTCQKASRRWKERDLLVVDTPGLFDTKVNLETTSIEISRCVLQSCPGPHAIILVLQLNRFTIEEQETVTRIKAIFGKAVMKYLIILFTRKDELEDQNLNDFIEDSDTNLKSIIKECDSRYLAINNKAEGAEGEMQVQELMGFVESLVRSNGGLYFSDPIYKYAEQRLKKQVGILREIYTDVLEKEIRIVEEECGLGKLSTQEGEEKIQAIREKYNLKIGNLREAAEKNIFTWIVEEVKKVLLKIWHFFS"
misc_feature 135..737 /gene="Gimap7" /gene_synonym="Ian3" /note="AvrRpt2-Induced Gene 1 (AIG1); Region: AIG1; cd01852" /db_xref="CDD:206651" misc_feature 153..176 /gene="Gimap7" /gene_synonym="Ian3" /note="G1 box; other site" /db_xref="CDD:206651" misc_feature order(162..179,216..218,507..509,513..515,615..620) /gene="Gimap7" /gene_synonym="Ian3" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206651" misc_feature 237..260 /gene="Gimap7" /gene_synonym="Ian3" /note="Switch I region; other site" /db_xref="CDD:206651" misc_feature 240..242 /gene="Gimap7" /gene_synonym="Ian3" /note="G2 box; other site" /db_xref="CDD:206651" misc_feature 297..308 /gene="Gimap7" /gene_synonym="Ian3" /note="G3 box; other site" /db_xref="CDD:206651" misc_feature order(303..311,339..392) /gene="Gimap7" /gene_synonym="Ian3" /note="Switch II region; other site" /db_xref="CDD:206651" misc_feature 504..515 /gene="Gimap7" /gene_synonym="Ian3" /note="G4 box; other site" /db_xref="CDD:206651" misc_feature 591..599 /gene="Gimap7" /gene_synonym="Ian3" /note="G5 box; other site" /db_xref="CDD:206651" ORIGIN
gttccttcagggtttgtagaactgcagccagattccttgaggacagtgtgagagctcatctgtcctgcagaagtcaaggcacctggattccagagcttccacatcagaccatggctgaactggatgatgactctctgaggattgttctggtagggaaaacaggaagtggaaagagcgccacagcaaacaccatcctggggcaaaagatatttacttctagaatcgcaccccacgctgtcacccagacctgtcagaaggcatcccgcaggtggaaggaaagagacctcctggttgttgacaccccaggactcttcgacaccaaggtgaacctggaaaccaccagcattgaaatcagccggtgtgtccttcagtcctgccccgggcctcatgccatcattcttgttctgcaactgaatcgcttcacgatagaagagcaagagaccgttactaggatcaaggctatctttgggaaggcagtcatgaagtacctgatcatcttgttcacccgcaaagacgagttggaggaccagaacctaaacgatttcattgaagactcagatactaaccttaaaagcatcatcaaggagtgtgacagccgctatctggccatcaataacaaagcggagggggctgagggggaaatgcaggtgcaggaactgatggggtttgtagaatccctggtgcgcagcaatggcgggctctacttctctgatcccatatacaagtatgcagagcaaaggctgaagaaacaagtggggatcttgagggaaatttacactgacgtactagagaaggagattagaatagtggaggaggagtgtggtcttgggaaacttagtactcaggaaggagaggaaaaaatacaagccattagggaaaaatacaacctgaagataggaaacctacgtgaagcagcagagaaaaacatattcacttggattgttgaagaagttaagaaagttcttttgaaaatatggcattttttttcttaaggagtctgaattttttttccatttattctgagcatttcttccagctcactctctacaactcaccctgctggccctttcctacagccaccagccaccggcagatttaagagatagcaaacccaggaattcaatgcaccagggtcaggactcagtgtcaggctccaaggctggatcacacttggcgctcagctccctatgctagcctgtcctcccgttcccaccatgatgaactgaaatgactttgtaaccatgagcccaaataaacactgctatctttaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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