2024-03-30 00:42:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001014096 1574 bp mRNA linear ROD 06-MAY-2023 DEFINITION Rattus norvegicus claudin 18 (Cldn18), mRNA. ACCESSION NM_001014096 XM_236603 VERSION NM_001014096.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1574) AUTHORS Linares GR, Brommage R, Powell DR, Xing W, Chen ST, Alshbool FZ, Lau KH, Wergedal JE and Mohan S. TITLE Claudin 18 is a novel negative regulator of bone resorption and osteoclast differentiation JOURNAL J Bone Miner Res 27 (7), 1553-1565 (2012) PUBMED 22437732 REFERENCE 2 (bases 1 to 1574) AUTHORS Krause G, Winkler L, Mueller SL, Haseloff RF, Piontek J and Blasig IE. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 3 (bases 1 to 1574) AUTHORS Fernandez AL, Koval M, Fan X and Guidot DM. TITLE Chronic alcohol ingestion alters claudin expression in the alveolar epithelium of rats JOURNAL Alcohol 41 (5), 371-379 (2007) PUBMED 17889313 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC088427.1. On Apr 20, 2005 this sequence version replaced XM_236603.3. ##Evidence-Data-START## Transcript exon combination :: BC088427.1, CF110345.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16676785, SAMN16676786 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1574 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="8" /map="8q31" gene 1..1574 /gene="Cldn18" /note="claudin 18" /db_xref="GeneID:315953" /db_xref="RGD:1359696" exon 1..252 /gene="Cldn18" /inference="alignment:Splign:2.1.0" CDS 33..818 /gene="Cldn18" /codon_start=1 /product="claudin-18 precursor" /protein_id="NP_001014118.1" /db_xref="GeneID:315953" /db_xref="RGD:1359696" /translation="
MATTTCQVVGLLLSLLGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVQQSSGFTECRPYFTILGLPAMLQAVRALMIVGIVLGVIGILVSIFALKCIRIGSMDDSAKAKMTLTSGIMFIISGVCAIIGVSVFANMLVTNFWMSTANMYSGMGGMVQTVQTRYTFGAALFVGWIAGGLTLIGGVMMCIACRGLTPDDRNFKAVSYHASGQNVAYKPGGFKASTGFGSNARNKKIYDGGARTEDDEQSHPTKYDYV"
sig_peptide 33..101 /gene="Cldn18" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 51..113 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); transmembrane region" misc_feature <159..605 /gene="Cldn18" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature 273..335 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); transmembrane region" misc_feature 399..461 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); transmembrane region" misc_feature 552..614 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); transmembrane region" misc_feature 615..815 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); Region: Required for role in regulation of RANKL-induced osteoclast differentiation. /evidence=ECO:0000250|UniProtKB:P56857" misc_feature 672..674 /gene="Cldn18" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56857; propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); phosphorylation site" misc_feature 756..815 /gene="Cldn18" /note="propagated from UniProtKB/Swiss-Prot (Q5I0E5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 253..417 /gene="Cldn18" /inference="alignment:Splign:2.1.0" exon 418..535 /gene="Cldn18" /inference="alignment:Splign:2.1.0" exon 536..646 /gene="Cldn18" /inference="alignment:Splign:2.1.0" exon 647..1538 /gene="Cldn18" /inference="alignment:Splign:2.1.0" ORIGIN
ctcctggaagtctgtgcccagcagctgaagccatggccaccaccacgtgccaggtggtagggctcctcctgtccctcctgggtctggccggctgcatagccgccactggaatggacatgtggagcactcaggacctgtatgataacccagtcacctccgtgttccagtatgaagggctctggaggagttgcgtgcaacagagctcggggttcactgagtgccggccatacttcaccatcctgggccttccagccatgctgcaagcagtgcgagccctgatgatcgtgggcattgttctgggggtcatcggcatcctggtgtccatcttcgccctgaagtgcattcgcattggcagcatggatgactctgccaaggccaagatgactctgacttctgggattatgttcatcatctcaggagtctgtgcaatcattggtgtgtctgtgtttgccaacatgctggtaaccaacttctggatgtccacggccaacatgtacagcggcatgggtgggatggtgcagaccgttcagaccaggtacacttttggtgcagctctgtttgtgggctggatcgctggaggcctcacactaattggaggtgtgatgatgtgcattgcttgccgtggcctgactcctgatgaccgcaacttcaaagccgtgtcctaccacgcttctggccaaaatgttgcctataagcctggaggctttaaggccagcactggctttgggtccaacgccagaaacaagaagatatatgatgggggtgcccgcacagaagacgatgaacaatctcatcctaccaagtacgactatgtgtagtgctctaagaccgcccccccaacatgtgtgcagaagaaacccttccccaaggaaagctcaccccaaagcaaggagattctaccttgttcccttgttgcttttgactgacggttgaaagttggtaaagtcttaatttcatctgtggggaggctagacagtcttggccacacgtctctaaatactccatcacaaaacaaccgagttaccatttacaggttaagagaccaccacacccacccttcccaatcctctgtttttttaccatagtaaatctggtgatggaatgtaattcgactcatggactaatactttgataatttctagaaatttaagcctgatgatgatctatttcccagcttgaccccacccacccccccagggaaattttaaaagaaaaaaatagattaaaaggcattatttactactcaattttgccttaccaacctcactgataataatgaacaccgattagagaaagaatgctagaggaaagatggttgtggcctccccagtctgtcatctgaacccttcatacatggtgatctagaacattattagccacggtgatcttcaaggaggcaaacaagtcctgtctgcttctcttggcatctgctgactctaacaagaccgtttcagaactttccactggaagtcctcttcctctcagaagtcagaaattctccctagaagaataagaaataaattcttttggtaacctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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