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2024-03-29 00:23:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001006955            2145 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus claudin domain containing 1 (Cldnd1), mRNA.
ACCESSION   NM_001006955 XM_213635
VERSION     NM_001006955.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Matsuoka H, Tamura A, Kinehara M, Shima A, Uda A, Tahara H and
            Michihara A.
  TITLE     Levels of tight junction protein CLDND1 are regulated by
            microRNA-124 in the cerebellum of stroke-prone spontaneously
            hypertensive rats
  JOURNAL   Biochem Biophys Res Commun 498 (4), 817-823 (2018)
   PUBMED   29530526
  REMARK    GeneRIF: When miR-124 is increased, CLDND1 mRNA translation is
            downregulated in the brain.
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Mineta K, Yamamoto Y, Yamazaki Y, Tanaka H, Tada Y, Saito K, Tamura
            A, Igarashi M, Endo T, Takeuchi K and Tsukita S.
  TITLE     Predicted expansion of the claudin multigene family
  JOURNAL   FEBS Lett 585 (4), 606-612 (2011)
   PUBMED   21276448
REFERENCE   3  (bases 1 to 2145)
  AUTHORS   Teckchandani A, Toida N, Goodchild J, Henderson C, Watts J,
            Wollscheid B and Cooper JA.
  TITLE     Quantitative proteomics identifies a Dab2/integrin module
            regulating cell migration
  JOURNAL   J Cell Biol 186 (1), 99-111 (2009)
   PUBMED   19581412
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000222.1.
            
            On Jun 11, 2015 this sequence version replaced NM_001006955.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083649.1, FQ100577.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840129, SAMN16676810
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               JACYVU010000222.1  21199054-21199245   c
            193-502             JACYVU010000222.1  21197387-21197696   c
            503-613             JACYVU010000222.1  21195707-21195817   c
            614-751             JACYVU010000222.1  21194399-21194536   c
            752-2145            JACYVU010000222.1  21192894-21194287   c
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q12"
     gene            1..2145
                     /gene="Cldnd1"
                     /note="claudin domain containing 1"
                     /db_xref="GeneID:288182"
                     /db_xref="RGD:1359273"
     exon            1..192
                     /gene="Cldnd1"
                     /inference="alignment:Splign:2.1.0"
     exon            193..502
                     /gene="Cldnd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             211..972
                     /gene="Cldnd1"
                     /codon_start=1
                     /product="claudin domain-containing protein 1"
                     /protein_id="NP_001006956.2"
                     /db_xref="GeneID:288182"
                     /db_xref="RGD:1359273"
                     /translation="
MDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYQSPAQENSSDANRIAWEDFMGDEADEKTYNDALFRYNGNLGLWRRCITIPKNTHWYAPPERTESFEVVTKCMSFTLNEQFMEKYVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACVCRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLGLPKNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
     misc_feature    259..912
                     /gene="Cldnd1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            503..613
                     /gene="Cldnd1"
                     /inference="alignment:Splign:2.1.0"
     exon            614..751
                     /gene="Cldnd1"
                     /inference="alignment:Splign:2.1.0"
     exon            752..2145
                     /gene="Cldnd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gttcctacaagtcccacaaggcccctcggctcagggccgctttggcccggcctagggtggaggcggaggcggaggcgcgggagttatggagggggcgggctctgcagggaagtgcgtcagaggaggcgcggggagagtaggttgctgtggtcggagctggagggcgaagccggtggagtgagaggatgggcgagcagtctgaatgccagaatggataaccgtttcgctacagcctttgtgattgcctgtgtgcttagtcttatctccaccatctacatggccgcctccataggcacagacttctggtatgagtatcaaagtcctgctcaagagaattctagtgatgcgaatagaattgcctgggaagatttcatgggcgatgaggcggatgagaagacctacaacgatgctctgttccggtacaacggcaacttgggattgtggagacgctgtatcaccattcccaaaaacactcactggtatgctccgccggaaaggacagagtcatttgaagtggttacaaaatgcatgagtttcacactaaacgaacagttcatggagaagtatgttgatcctggaaaccacaacagtggcattgacctgcttcggacctacctctggcgctgccagttcctcttaccgtttgttagcttgggtctgatgtgcttcggggctttgattggactttgtgcctgtgtgtgccgcagcctgtaccccaccattgccacaggcattctccatctccttgcaggtctgtgtacgctgggctccgtgagttgttatgttgctggcattgagctgctccatcagaaactagggctgcccaagaacgtatctggggaatttggatggtccttctgcctggcctgcgtctcagctcccttacagttcatggcttctgctctcttcatctgggctgcccacaccaaccggaaggagtacaccttaatgaaggcttatcgtgtggcgtgaagggaggctgccgccgatgattactatttctactatttcttttttactgttgaggttttcccttgtcttcctctcagttgtctttaatttttatttttgtggatacgccattttattctaaaagtcctttttatttatatacagtgccactaaataccatttaaaatgtatgtggttttctttgagtggctcagtcattttaccaaactgatctaggttcagtcagagttcagacagaaagaactttagagatgtgacccagatttgtaaaagaatattagcagtggaaaattgaccccaaacagggtctgctaatgtctgctaaatccagtagtgtagtaactgtgtgtgaaactagaaacgaatttctgtatgatatcggttatcactgtcagaacttcataatcactttcctgtatttagtcagctagcagaaccagcgttcctaaagatgtgtgcatacaaaattgggaaattatctaacatctgtgtccctaaactttggtacattacttcattcgaggtgaaatatggcagctgcttatactgtgattgtctacaagaaaaaaaagtgaaaaatgtttacttgaaattgtagcttttaactgcaaaatttcaattcaatgagaaaagctggttatactttttttttttttaaaactgaaactcattaggattttcagtgccaccaaaccattgtggatttttgctgctcccccctccccccatctggacacaccaggcttattaaagagtactttctttttaacggagaagaatcacagccaattccccaactgttttgtcccagctgagtactatatgggaggtcctatcaatatcgaccccccagagctgggggtcctaccaccacaagatctaaagctgtggccacctactgacctccagttgtgggtctttatttcttgtggtgaaatgatgtgcctttccttgcccagatcccttcctggtgtgtatcaacattactcactgtcttctaattcagtcatttttttataatatgtctgtaaacattgaacttacaaatcttatttatttactccattattgtagcacttcacagattaaaaaaagtgtgactcagtactttcttaccaaatcctaaatctgtcttttttaaaaaataaaaaataaaaaagaaagagaaccatg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]