2024-09-28 09:30:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_036157668 1617 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus trafficking protein particle complex 6B (Trappc6b), transcript variant X1, mRNA. ACCESSION XM_036157668 VERSION XM_036157668.1 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1617 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="12" gene 1..1617 /gene="Trappc6b" /gene_synonym="5830498C14Rik" /note="trafficking protein particle complex 6B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 2210 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:78232" /db_xref="MGI:MGI:1925482" CDS 737..1099 /gene="Trappc6b" /gene_synonym="5830498C14Rik" /codon_start=1 /product="trafficking protein particle complex subunit 6B isoform X1" /protein_id="XP_036013561.1" /db_xref="GeneID:78232" /db_xref="MGI:MGI:1925482" /translation="
MGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL"
misc_feature <737..1090 /gene="Trappc6b" /gene_synonym="5830498C14Rik" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" ORIGIN
cgcaccctggggtcctgcggtgacacttgcctccattcctctcccgccctgctgacgtagacgcccggtagcttagaccgagctggtccacctagaggcatcccacagaatataatctgtctgtcggctgcctcctccgagatgggatctctcatccatctccttttttgtcttctgtgtggtgtgttcgtgcccgtatgttcctttgagtgcgtgctacaggactttattcttgaccttgataagatttacctagagtctaactgcagagctgattgtgactttcctgcttaattttccaacagttttagaggccagctagccactgtcccagcgagactatacctttctcatctcttgattcaggataccactgcacacaactccaaggccacagcctgatgaaccgtggagttaaagcaaggaaactttgcgagattttcagcacattccatggccggacccagaggtgctgacggtgatggtgcagctcatcaccctcatcttcagagatctccaaggagacctgagactcaggctcggctgtatgagcaagtatgcagatagagcagacagcatgctgttattgcctttgatgaatacatggaactccatcagatgatgcggaaaacattctcagagtgaaaaacacagcaaggtctcatcatactcaaaatatccatctgctacaaagtgtttccaggaaaatggaaggtgtgttactaagctggagagcatggggttccgagtggggcaaggactgatagaaaggtttacgaaagatactgcaaggttcaaggatgaattagacatcatgaagttcatctgtaaagatttttggactacagtattcaagaaacagattgacaatctgaggacaaatcatcagggcatatatgtacttcaggacaacaaatttcgactactcattcagctgtctgcaggaaaacagtatttagaacatgcgtccaagtatctagcattcacatgtggcttaatcagaggtggtttgtcgaacttgggaataaaaagtattgtaacagctgaagtctcttcaatgcctgcctgcaaatttcaggtgatgatacagaagctgtagagcgagctggcgactcctgggcagagcgttgcacatcctgatttcacctcatcgttggttatctgcgttggagcaaatcgttatctcaccagagtcacatagaccaaatcaaagtagacacaggtcctttgaccatgacagaaactgactgacctattcagtgatttcagagaactagacaccaagatgcaaggctcttcattttaaacatctttatttccataggtgattagcatttaaccatcaataggaagtgaaactcagggtgtgttgaattgctgtattaaaaaaaatgcaccaatcagaatagtttgtgttcaaatgaccaaaatttgttgaactataaatctgttttagttatttaaaaaagcaaaccactatgttaaattaagcttaatttttattgtattgcttataatttatttctgtcgagagaattcatatgcttatgtaaggatatcatttatacattgtgtatatatgtgtatatataaatacatgcattactgtctaaatta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]