LOCUS       XM_030246522            8994 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ataxin 3 (Atxn3), transcript variant X1,
            mRNA.
ACCESSION   XM_030246522
VERSION     XM_030246522.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246522.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8994
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..8994
                     /gene="Atxn3"
                     /gene_synonym="2210008M02Rik; ataxin-3; ATX3; Mjd; MJD1;
                     Sca3"
                     /note="ataxin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 13 ESTs, 460 long
                     SRA reads, 3 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments, including 38 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:110616"
                     /db_xref="MGI:MGI:1099442"
     CDS             3724..4788
                     /gene="Atxn3"
                     /gene_synonym="2210008M02Rik; ataxin-3; ATX3; Mjd; MJD1;
                     Sca3"
                     /codon_start=1
                     /product="ataxin-3 isoform X1"
                     /protein_id="XP_030102382.1"
                     /db_xref="GeneID:110616"
                     /db_xref="MGI:MGI:1099442"
                     /translation="

MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGSGIFDEDEDDLQRALAISRQEIDMEDEEADLRRAIQLSMQGSSRSMCENSPQTSSPDLSSEELRRRREAYFEKQQQQQQEVDRPGPLSYPRERPTTSSGGRRSDQGGDAVSEEDMLRAAVTMSLETAKDNLKAERKK"

     misc_feature    3748..4209
                     /gene="Atxn3"
                     /gene_synonym="2210008M02Rik; ataxin-3; ATX3; Mjd; MJD1;
                     Sca3"
                     /note="Region: Josephin; pfam02099"
                     /db_xref="CDD:460444"
     misc_feature    4507..4686
                     /gene="Atxn3"
                     /gene_synonym="2210008M02Rik; ataxin-3; ATX3; Mjd; MJD1;
                     Sca3"
                     /note="Unstructured region C-term to UIM in Ataxin3;
                     Region: SUIM_assoc; pfam16619"
                     /db_xref="CDD:465203"
ORIGIN      

agggctacacagagaaaccctatctcgaaaaacaaaaacaaacaaacaaacatggtcattgacaatgccatgaactggacatattatggtggatcaattcatagttctggggaatggactacacaagagtccagatggtttgaacttagcagtgggcatataacagggggagagggtgtgggagatagatacacagtatgtaagactggagtgaagggcaaagtgttaacaattacaggaagggaatcacaaacgagtctccagctctattactatcacctaaattgtgtcatctccaaagtttacaggttgaaaggtgtattagcattaagaggatatgactgtgtcctggtcatgagagtatagctgtcccctacaagagaagcacatgctcttaaccatggagccatctctccagccctccagttaccctttaaataagtgtatccctataaaggaggctgaagggagcttgctggtcctctttactcttctgccacataaggacacacaaaaggcacatcaatgaaaaaaaaaaaaactctcctgagacatttggtctgctttagccttcaccttggactccccagactccataactgagcatttaatctctgatggtaatttaccctgtgcagccacttatagtagcccagcttcatatactcacttgaacaattacatcttaaaaaaaaatcaaaacactagtaaacactgcattttcttgttaggaggctgtattttcctggttaagccacaattccttaagcacataggctatccccatgttgtgtgacactgttcctggagaactgtgaacatctacccagagaactgataccaccaaagtccaacttggtgaaccaatcagttttattgagattactaactggagcagaaatgacaccaaagcccactccagcaagtcaacagctcacaaaatctggaaacatgggtcacactacataccttgcagatagcttaacagagtgaaatgtcccttacaggcaatgtggctcatctttgcaggcagttcagttgatgtgagcctcttctaggcaactctgcttcttggagagtgtctctcagtagtcctactgtttatgtatgcttggggaaggaggagcctagtgaatcttgtcagtttcagggacttcctgaagcctcctagttgtttactttctgagctaaagacacccttctgtaagactaaatgttctccctgttcttagaatattctatgacctcactagcttccttgcatgatggacttcatctccctttagaatatcctttgtggtaaagagcttccctccaataaggacagctctaccttttgttttatctcaagaggaaactgcatacaaaatagtcaacaaatgatatggcagctccttgaattagctagctggttgtcactggcagtctttattttcttgcctctcacttcctttcttttcttgaacttgtctcacaaaaatgatctcaacaacaaaactgagcagtttcttttgagtctttctgcccctggacttcctgggagcatgtgacacggacttgtccttgaagcattcccccgtgggccttccacttcagtacactcagcagcatttgcaccctttgtgcctactgctctatcttcagggcttagctctccatcctcttttcaatctcttccttttctctaagattatactcagcgtttatggttttagttaccttgtgttttaaatttgtttctttatatttcatgtgtaggggtgcttgcctgcgtgactgtctgagcatccctgtgcatcccaggtacattgcagaagcaacagatcccctgagtctcgagttaccaactgctgtgagcctttatgtgggttctgagaatcaaacccaggtcctgtacaagagaagcagcaaatgctcttaaggacacacccatctctccagcccttctaaacagcaatgactctcacctcacagcttaaaacagcttctgaaaactccaggcctgtcatctatcactctacagaaggactgtcttagttagggttttactgctgtgaacagacaccatgaacaaggcaagtcttataaaaaaaacaacatttaattggggctagcttacaggttcagaggttcagtccattatcgtcaaggtgggagcatggcagcatccaggctgtcatggcgcaggcagagctgagagttctaagtcttcatccaaagactgctagtggaagactgacttccaggcaactggggtgagagtcttaagcccacacccaccgtgacacacctactccagccaggtcatacctattccaacaaggccacacttccaaatggtgccactccctggtccaagaatatacaaaccatcataagtacctttagttgcagagatatttaagctcagtattttctaaattaaaagccttttcttctcttcccaagaccctactcattctgtaaagtatttctggttggagtatcacttctgctttacatggtacctagagcagaaacccacaagtctttcctaacaatacccccatcccaccccagtccctcatcaaagtcttctgtttcctaaagcttcaaagtggtctctctccattctcaaatcactactggagtcctgaccaccagagtctcttcatttctccccaaatgcctttcaagtattgttccccagtgatcctctaaaatcctaatttgaccccatgtctctagttttaaaaatctttaaccgcctgtagctttttttttttttttttttttcccggtagggaggtggtggacagggtcctcctatgtaaccctggctacaggctggcatagagcagctgtcctccaacacaacatatgccttccttaccttcaggtacaatgagcctttaggagactgggcctttgctacattgaagaacctaaaatggttccaccatacaagatacaacgcccaatacaacgcttaatctttgtcaatccccccctccccacccccatcccctgcgcgagccactcaatattttgctggatttttcacttcctcaccaacgcttcctccttcagagatggcgtatttaccccaggacctgatattcattccaacagccaactatgttggacagtgtgctgtgctaatttcttcgtacctacatttctttatttgtataatattacaaaagacacacacacatcaaaaaatgccgtattaaattgcgcttacaactggactattctaagtcagtcctaactaaacattagctatagtttttacacaaatattaggtatgtggagaatgcctcttctggaatgaagtcttcagtgggagaggagttgctcacataaagatgaggagaaaggaccaaagaaggtggagatggaaaaaaaaaaaaaaaagaaaaaaaagaacctaaaacttggctgcgaggattctcttctagaaccctagaatcacaagattgtcccgcgtagagaagttcctccgcacagcaggcggcgccgcagcatcacgcttgccgcggggaggaccaacgccgcccaggtcacgtgtcccgtgctcccgggttcgcgtgcctcgtgacgtgcgcccgcagtagtgattggttggcgagaggcacgtggctagggcggggcggaccggggctgaggggtggggccgggggcggagctgctggagggggctgctccgcgccggggccgttggctccagacaaataaacatggagtccatcttccacgagaaacaagaaggctcactttgtgctcagcattgcctgaataacctattgcaaggagagtattttagccctgtggagctatcctcaattgcacaccagctggatgaagaggagaggctgagaatggcagaagggggagtcactagtgaagactaccgcacatttttacagccttctggaaatatggatgacagcggctttttctctattcaagttataagcaatgctttgaaagtttggggtttagaactaatcctgttcaacagtccagagtaccagaggctcagaattgatcctataaacgaaagatcctttatatgcaattataaagaacactggtttacagttagaaaattaggcaagcagtggtttaacttgaattctctgttgacgggtccagaattaatatcagatacatacctcgcactattcttggctcaattacagcaagaaggttattctatatttgttgttaagggtgatctgccagattgtgaagctgaccaacttttgcagatgatcaaggtccaacagatgcatcgaccaaaacttattggagaggaacttgcacatctgaaagagcagagtgccctcaaagcagacctggagcgcgtcttagaagcagctgatgggtcgggcatatttgatgaagatgaggatgatttacagagggctctagccataagtcgccaggaaatcgacatggaggatgaagaagctgatctccgcagggccattcagctcagtatgcaaggtagttccagaagtatgtgtgaaaatagtccacagacatcaagtccagatctctcttcagaagagctgcggaggagacgagaagcctactttgaaaagcaacagcagcagcagcaggaggtagaccgacctggacccctttcatatccacgtgaaagaccgaccacaagttcaggaggacgtaggagcgaccaaggaggcgacgctgtgagtgaagaggacatgcttcgggcagctgtgaccatgtctttagaaactgctaaagacaacttgaaagcagaaagaaaaaaatagtacctttaaaagtcattttgctactcacactttgtaacattgtctgtgtgattacagtgtaagggccactttggcagtatgttcaccagaagagataaagacactgtagtggtttgtaagcagaaaggcagaaatgtgtcataggactaaggaacgatcgagatactagccaaagaggcagtcagcaatgaaagaaacttttctaaatgtcccgttttgtttttcaaatgtgcaatatctgactgaaattatggaatttttgttggctcttttggaccaactgattagctcttgccacagaacttgatcctataatgtttcgttttctctctgcattgggggtggcttggctcacttgagcttttacttcatttcagacctaccttttatgaaatgtcttttatatgtcttgttacagaaagatcagtctgtcttctcatacatatgtcgggcacgtggatgcttcctggtggtattttctctaatgtggtgatgtgttgcttttaaagcctttgttagtgggatcacatttcctaattgtgctgcattcctctactctgcagtcagctctgttcttgtaactgagcacgtgagcgtgctctgtctggatgccctgagagtggctgactcctggctggagcccttcctgtaccttccttcctctcttctccagctgagaaaagaggaggcagaggacacaaacagatttccttctacgtaacatgcaccatgaatgcaccacaggagaaactcgcccttcagtcctggtggtgggtttgtcctagtttttcatctgtgacaggagctttgtgttctaatcacgattaagtcctggaaaatagatgcctgcttcactttctaaaaattaaaaatatttttttttctttttctagtagaaaataggctgctaggatgatggtctagaatctgaaagtaatttactaataaaatatatttaaataatactgtgggttgacccttgcaatcatgtttaaatcgcttaagaattacagaagtcacaaagcttaaagggtctgtttgtaaataggaaagtccttagttttgataaacattaagcaggatgcagagctagtcttgctgggtcaatacgtggtatgatttgggtggaaattaactctgtgtctttgtcatggtgtcatagataccctgatacctgctttcccctccctcccctttgaagcccctttgaatggtgacttgtacataggtaaagtccaagaagagattgtagccagcttaggaaggggcagcatgctatagtgctctactggtgtgtgctctgcacacgtttttatcagggaaagttttggatgtaggatttattgctgtctaactgaaaaagatacaaatatttttatttatgcttatgaaatagctttttcttgataggatggatgtttggtttggtttggttgtgcgagggattgaacccagggcctccagtgtgctaggcaagcgccctacctctgagctatatccccagatccagaacaggggtttccttgtttgctttttgttgtttttcttagccattttgtgccaactacagttgttttttaaaaatttgcttcatgaaaaattaggcagtcctattttaaaatctatgaagttttctttcagtaattgcaaaggttcagaagagttgggcagctgtagggtgttagagttaggactttgcttacagttgattgctatactgaagtatgtaactactcccgtatgctgctcacatgtctagacattcattggcccttttcctttaccctttgaaaaatcacattaaactttccatacatttagattggtgtgctgcctgatgaaaaatgagaaagccaatatacacttcagctttaactttagagtttataaaatgttcatataacacaccctacttaaatcatgtatgaaatacagcatgttagtcttttattagaaatgttttaaagagaaactgagcacacactgaatctatttgagtgaagctttttagtttgttatatttatggcattgtccaggcagatccaaaatcaccattgaattgccatcctctttgggttgacctaggcttactaaacatttagatttcattattaatgagtagccagtatgaaaagatgccaatgcttattctagccacagtatccaaagtgtaggagttctatgacattctaattcataaccaggagttgctgtttatagtactgcaggacagacaggggcaagggactccactgccacggctggtcacagactcgactaacttttccatttgtttttttaccaattggaatacttaaatgtattgtatgtaatgaatactaaactactgataatcattttttttaaatctgtaacttgttctgccagataaaatgcgtacagccgtgatgctagtgttataaccaagtgtaaggaccctttggaaggccagacatggtgctgtgttcctttgatgctggtacttaggagaaatctgcagaggtaggcagatttcttcttgagttcaaggccagcctggtctacatagtaagttccagactttctggagctgcacagtaagaccctgtcttaaacaaaaaacaaacaaaccaacctttggaaagatcactttcatattttgggatgtcatgagcttatctatgtttcaaaattcagaatagctgtcctttggcctaaaccataaatctacacccccaacgacagtactatgcagacatttcactgatttaagttgtttgatacagtcagtgcaggtgaactccatgctaaagttttaagccttggccaaataacttacacctcacagactgtctgaggcggtgcttctttttttcctgaaaacttgatttttcttgatgaagccaaagttaatgagcatgaattctcaaaggagtagtctgctttgttttacttaatatcaggttgagtgaagtaagttttattcgtgtcagagtctaagccacacattttgaatacccacatgtttgatactatttaagtcatgctgtgccaagagttactaaattcttagaactggccctgtgccctgcctaaggccagacagggcagtgcggaacccaaatgtgctatctgagagtcttaagctaggaaatctgggtgttttaaattagtgagaggtttcagttagtgttgaaacctccagatccgacttgatgttaggcagtgtggatgtgctcagtggtagagcagttacctagtggcccaggccttgggttcagtctctaacactgcaaaaggagagcagtggctcacagtgtaacctacgtttagagagacatgaaaggaagtactttcaaagtgaatgtttgttgtaatttagtcctaacaagtgtagagctatgatatgtgaccttaattaagaaaaaccagattggatcagtagtatttttgttgtttttcatatttaacataaaaattcccttcatccctaatttgtttataattaaagagacaaattgattttgtattttttcaaagttttatacatattaaaagggttttgttgtagtctatcatgaatgaaaaggatatttttttttttaatttgaggaatacttttgtgtgtgtgtgcctaaaatggtctgtcattttaagaattagcacaaaaaaaaaattagctagttcctaaatgtatggaggtttaatagtaccagtacacagttgtgggtgaggcactagtgagaagtgtgtgggaaatgcagctgggtaggtgggactcacttgtctctgaatggtttaaaggtggtatttcctggaatttttttaatgattttttttttcaaggaagacagacattcgaaatgtgcttatcaaatttctacaacactggactaataggaataactttttttttaaaaaaaaaagactgttctgtataaataaaatatatgaaactcaagtgcaaaagccgtgaaaataaaaggcattgtcttctgtcaatgtgatgcactgtggccgagcagttccctcaggactcaactctgcagcccttcctcctgtgcctcaagtgtcggctgccactccacaggtcttccgtctgtcggctcctttgaaagccgggcttccaaagccctgttgaacactgagggttctggtgatgtgtgttaatgagttgtattttaaatatcagagattattaaataaagagaatgattttctattaa

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