2024-09-29 09:42:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_006503483 8017 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus argonaute RISC catalytic subunit 4 (Ago4), transcript variant X4, mRNA. ACCESSION XM_006503483 VERSION XM_006503483.5 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_006503483.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/01/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8017 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="4" gene 1..8017 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="argonaute RISC catalytic subunit 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 25 long SRA reads, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:76850" /db_xref="MGI:MGI:1924100" CDS 2653..4359 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /codon_start=1 /product="protein argonaute-4 isoform X4" /protein_id="XP_006503546.1" /db_xref="GeneID:76850" /db_xref="MGI:MGI:1924100" /translation="
MECTVAQYFKQKYSLQLKHPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPSQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKMNAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEITQELLYSQEVVQDLTSMARELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKMERVGKSGNVPAGTTVDSTVTHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature <2656..2838 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2923..4230 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(3334..3336,3346..3348,3382..3393,3400..3402, 3424..3426,3433..3435,3445..3447,3457..3459) /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(3538..3540,3544..3546,3784..3786,4198..4200) /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="active site" /db_xref="CDD:240015" ORIGIN
catgacagtttagtcctgtaatctctaagatgagaccgaggcagggggattgctgtgagtttgagttcagcctgaactatcccaagagaccctgtcttaaaaaatatttaaaaaaaaaaaatcacaaaatgagccgggcatggtggcgcatgcctttaatcccagcactcgagaggcagaggcaagcggatttctgagtttggggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaaaaaaattacaaaatgaaagaaaaagataaggaaaggaaacccaaattaatagtaaaatttgatatccgtttgataacagaggaagctattgaactttgagaagatgggacacagtagagtggttttcaggatcacaggagtcttgacttaccatcaaagctttagaagatattttagggatttgtgatttagtatacctcttacctatactaaacataggtcaacttctatttaagaatgtaatcatcagggcctggagagatggccaatccatacggcacctactctatagcatgagcccctgagtttggatccccatttcccacagaaaacctaggcatggtggggaacatgctagcgcgagcggggcagaagtgggaggatccctgagcttgctcatcagccagcctagtcactgactgagtgctctttaggtgcagcgagagactctgtctcaaaaagcaaagtgattgaggaggctgcaatgttgacccctggcctccagatgcacacacacgcatgcacacatatgctacatacatgtacatacaaacacaactaagacttttaaaaaggaatacaatacttgtaatcaattactatactgttgtaattttcagtacaggatgactctactagggtctagccatcatacaggccttcattggaagacagatactgctttgaatatttgtgtagttgtcctcccttcctttatagctccatgttgctctcagctattagtgcctgtctctagcagtgtgttctttccctcttactcaatcttgcttttctaatcacacaatgtgtggtgcatcgagttctgtgcctgagtgagagtgagcatggaagtgcccatgcacttactgcacgtggcaaatgcattcctgtcctcgggatcactaaccttttgtctgacatgaaagattggcttttggctctcctaaataaacagtgtttaaatacatatcaatcttacatgagttgggttattcaggaattcttttcttgttataactttgtgtccatggttttctctctcttttcttctccctcttcttctctctcacccctgcccctctctctctccttgctgtctctttctgtctctctctttctgtccctgtttctctgtgtgtgtgtctctctctctgtccctgtctctctctgtctctgtttctctctctctttgtgtgtgtgtgtgtgtgtgcattcacacacaccagcatgccatagcatatatgtggaagttggaggacaaattttaggagttgctactctctttctaccatatgatccagggattgaactcaggatatagggcttgtaaagtgagggattttattttattttattttattttattttatacctcttaatctatcttcctaacctgtgtatttagtcttgttgcctccaaactacataatttgccttggctaggaatctcaaatcttcgaggtctaaaaatgtggcctcagtaactatagtcattcatttagaaaaagtttatcttgagcaaataaaattatgtgcatgactccaagtatacatcgcactagccagcaagataggttgaagagagggcccagtggttagaacttgttattcttgtggaaaatcaggatacagttcctagcacccacagggcagctcccagctggccataactcaagttccaagggatccgtgggcctctgctgacctctgaggcaacggcgtgcacacagtgggcgtaaatatttcagcctggcctcaaacatgaggtggttctcttgcctcattctcttgagtgcttagggtttcgggtgtgagccaccagacctagatcttctgtgaaaaaaaaaaatttttttttgaattaaaaggtttgtttggttggttttttttctcagcttcaacaaaaattgaaatttcattggacttgttctggtataatactaaaatgacttcactgaaagtactcactgaaagtactcacggagagtactcacggaaagtactcactgaaagtactcactgaaagtactcacggaaagtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgagaatactcactgaaagtactcatggaaagtactcactgaaagtactcacggaaggtactcactgaaagtactcacggaaggtactcactgaaagtactcacggaaggtactcacggaagcttccctttgcagctagagaatggccaagctatggaatgtacagtggctcagtattttaagcagaagtatagtctgcagctgaaacacccccaccttccctgccttcaagtggggcaagagcaaaagcatacctacctaccacttgaggtctgtaatatagtggcaggacagagatgtataaagaagctcacagacaatcagacatccaccatgatcaaagccacggcaagatctgctcctgacagacaggaggaaatcagtagactggtgaagagcaacagcatggtgggtggacctgacccatacctgaaggaatttgggattgttgtgcacaacgagatgacagagctcacaggcagggtgcttccggctccaatgctgcagtatggaggccggaataaaacagtagccacacccagccagggtgtctgggacatgcgaggaaaacagttttatgctggcattgaaattaaagtatgggcagtggcttgttttgcgcctcagaaacaatgtagggaagatttgctaaagagtttcactgaccaacttcgtaaaatctccaaggatgcagggatgcccatccagggtcagccatgtttctgcaagtatgctcaaggtgcagacagcgtggagcccatgtttaaacatctgaaaatgacatatgtgggcctgcagctaatagtggtgattttgcctgggaagacaccagtatatgcggaggtgaagcgtgttggagatacccttctaggtatggccacacagtgtgtccaggtcaaaaacgttgtgaagacctcgccccagaccctttccaacctttgcctgaagatgaacgcaaagctgggagggattaacaatgtgcttgtgcctcaccaaaggccctcagtgttccagcagcctgtcatctttctgggagcagatgtcactcatccgcctgctggggacgggaagaagccttctattgcagccgtggtgggcagcatggacggccatcccagccggtactgtgccacagtccgggtacagacatctcgacaggagatcacccaggagctcctctacagccaggaggtcgtgcaggacctgacgagcatggctcgggagctgctgattcaattctataagtccacgcgcttcaagcccacacgcatcatctactaccgcggaggggtatccgagggacagatgaagcaggtagcttggccggagctaatagcaattcgaaaggcatgtataagcttggaggaagactatcggccgggaataacttacattgtggtgcaaaagaggcaccacacacgactcttctgtgcagataaaatggaaagggtggggaaaagtggcaatgtcccagcaggcaccacagtggatagcaccgtcacacacccgtctgagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcactgcagatgaactccagctactgacttaccagctctgtcacacctacgtgaggtgcacacgctccgtctccattcctgcccctgcatattatgcccggcttgtggcattccgggcaaggtatcatttggtggataaagatcatgacagtgcggaaggcagtcacgtgtcaggacagagcaacggccgggatcctcaggccttggctaaggctgtgcagatccaccatgatacccagcacactatgtattttgcctgagagtcttggaaaagaactcaacaaatttggcatctcacgcatcctcaaaatgtttccgacgcctactgcctctctcaggtggtccctaccagcagctcagaatggttgcactgagtctactctgcagccctgtctgatacatcaacaaaattgagccagttgggtttttttgttaaagaaatagatactcatagattgtgttttctgatgcactgggcagaatttttacctcaacgtgcaaaggctgatcagccttgactttctaaaggactttccaagaagggtttctatggaatcttttgctagctgtggtattcaccgcatctagtcttataagaggagtatttccttttttctgtgtttattgaatggtgtgcataagtgggagagagaaaccaaacggcctgtatcatttccatgtaactttttaattgggtgggtccatagacctcttacttctgactttgccactgtcaatgcctttaaggagcatcagcttttgaaagttttacagaactctgttaccttcactgttctactgatctcttcgggcctgcactgtggggtacaggctgcccagcaattgcactatatttggctgcagattcgaacaggcagttcccttacttgactggcttttgtgagtctgtgacataagcagatgtgatgtgtgtcacagggacagatacactgccgtggtaaaaagtacccatgttttccatatttggaaaaagagaattagcttttagtatttttccacatcttcaaacatgcccattttatgctgctgtgtggtatgctagatctaaacgatctttaaacttctctcatagaaagttaactttggcaataagcatttgtaaggcccttgccctttctcctgacgtcgttttctagatgagatttcagtatgattttatcaactatttcttacatatcataactgggatattctgaaaccagtttataaagacacagatttcaatgtccttataaataattgtttttaaaacaaaacaaaacaaaacttattttatagtcagtgtcctgtcactttaaaaaaaaaaaaaagaagctggaaccaggatgctttgtgatcggtcaggctttgccgatgcataaggcacattgagcagtactgcacttgaaaagaaagtaccagccagtgaaaacctggtttccctgggaatcaggggtgcacacacggctgcctacaagacagcctgaaatgtgcttggtggctctgcctttctctttttcaactaaaactctgtagaagttgttgttgttgttgttgtttttctttttctgtaacagattctagattccctcacaggaagacaggattccgtttcttgtccaaacaaagggaattgatgtaaagcaagaacagttagaacatagggaaaatgtattctgtatttagtgtagataataccttgtaaaggacaagtgttacatagtcaaggtagttgcacccacggtttccagcccatgttttactctaacctggaaggtcaaggagtaaaaggtaagaggctctctgtagagccacactcctcatggctgaggagggtgctggggaaggaagagacaggcacaatatgctaaaagcaattttgcagtctcggtgtagaaaccattggtgggaaacactggatcaaatgggaaagggtgtttgcttgaactcattaattggtccaaggttcaaatctgttaaatgggccctctcagaatcccagcaatagaaagcactgtttcccttcagtggcttcagcaagtgtgtagatacattcatgtttacatttctgtgtgcagtcgctcagcagtgccactggtgtttgctgagcctggtctccgagagagtttataatgtccgtctagtcctatagcacatgcggatgggtgcagacatctttaatctctgcagacagtgggaaaagcaagtcctgtgactgaagcacaacacaggcgtgaagcgacagcagacgtccgttccctgagatcttcctttttttctgcaaatacctccctgggataatacaaatccagacatgttgatgaatggctgactgccgcttttattcacacctgttcagggaaagcacagaaaatgctctgtagcacagacattctggacccaagaggagggggaacaaaggaagcctttttaggaaaaggaaaacttgcctggagtctgtgatgtgaagaactctcggtggctggcagctgacagaaggcaccgtacctgcacaggagcgcctcgggcttgcttgttgacaatgcacagaagagactctagccatcttccgacaggatggaacagtgagcgagctgtgtgcccggaagccccatccacggtcctgcaactgagttgtaggtttgcccatgagcgatatgcctgaaacaccactgccggtcctagtatgctggggtgaatccgtgtggagctggaggaaaagccaggagaccaacttttgtagaaaaaacggtatcaataagtgtgtgaagccgttgttctgggcaagtggaaagaaatatggaagagttaggattacttgggggaggggaacttgctgaggggtgaacagtccagaggtgatcacttgagaatcagaactgcagtaataccaccgtaagcaaatctgaatgcatagttttaacttaactggggttgacaattcaaataggtacctccccccacccccccaaacaaaaacctgactgagttgttatgcatgtgtcaatcactgggaggtgtgcattctctagtagtgttaggctgtttggttcttttaaatgcagcctatttaggtactgtcatgtagtgtggaagattttggtgcggcaactctaaagaatgacatttttggggctagggagcataggacattaagaacgggaaagacccaagtgttgaaccaattgtgtttttttgttgttagttgttgaatcctgagttgatgcagtcagcattctgggcaggcgaaccacctttgttcttactgttaagttctttgtgctgcttccaaagatgatttacaagcagggatgttctaaatgggtctgtaccttagggtccggggtccagcccatatcctaggtcaaagcctacccacctggctcagctacctactgctttaaccaggctcatcctctctactccgctgtggttgccctccacggatgtgctctgagattctcttgctcagtggcaaggtggctgctctgctttcatttttaaaaaagcggaagttaaggtcatcatactaatactgcatcaactccaggaattaaaggaaagatctttattgctcaaccattttcttattggttcctactgacatattcatctcctttctgtgtctactggctgaaatgtttgtgtttgttcatctgactaacggtatggtttctgtatggttagacttgtaatgttttaaaatgtattttattactttggactggatgttcctctccagcgatacgaggtactttctaagctattaaggaagggtttgaatccctatgtgagataagataatggttgtttaaattttgcagaggtttttgttattgttactggttttgattttgggtttttttttgacctgtggggatattttgtgtttatgtgtccaaaaagtggggaggggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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