2024-06-29 21:20:41, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NR_151663 1946 bp RNA linear ROD 06-AUG-2023 DEFINITION Mus musculus transmembrane protein 38A (Tmem38a), transcript variant 4, non-coding RNA. ACCESSION NR_151663 VERSION NR_151663.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1946) AUTHORS Murakami M, Toyama Y, Yonekura M, Ohba T, Matsuzaki Y, Sawamura D, Murakami AM, Nishi M, Itagaki S, Tomita H and Takeshima H. TITLE Decreased cardiac pacemaking and attenuated beta-adrenergic response in TRIC-A knockout mice JOURNAL PLoS One 15 (12), e0244254 (2020) PUBMED 33347504 REMARK GeneRIF: Decreased cardiac pacemaking and attenuated beta-adrenergic response in TRIC-A knockout mice. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1946) AUTHORS Zhou X, Park KH, Yamazaki D, Lin PH, Nishi M, Ma Z, Qiu L, Murayama T, Zou X, Takeshima H, Zhou J and Ma J. TITLE TRIC-A Channel Maintains Store Calcium Handling by Interacting With Type 2 Ryanodine Receptor in Cardiac Muscle JOURNAL Circ Res 126 (4), 417-435 (2020) PUBMED 31805819 REMARK GeneRIF: Data suggest a function for TRIC-A protein (TRIC-A) as an accessory protein that interacts with ryanodine receptor calcium release channel (RyR2) to modulate intracellular Ca2+ signaling. REFERENCE 3 (bases 1 to 1946) AUTHORS O'Brien F, Eberhardt D, Witschas K, El-Ajouz S, Iida T, Nishi M, Takeshima H, Sitsapesan R and Venturi E. TITLE Enhanced activity of multiple TRIC-B channels: an endoplasmic reticulum/sarcoplasmic reticulum mechanism to boost counterion currents JOURNAL J Physiol 597 (10), 2691-2705 (2019) PUBMED 30907436 REMARK GeneRIF: The role of TRIC-A and TRIC-B channels in skeletal muscle sarcoplasmic reticulum channels is reported. REFERENCE 4 (bases 1 to 1946) AUTHORS Robson MI, de Las Heras JI, Czapiewski R, Le Thanh P, Booth DG, Kelly DA, Webb S, Kerr ARW and Schirmer EC. TITLE Tissue-Specific Gene Repositioning by Muscle Nuclear Membrane Proteins Enhances Repression of Critical Developmental Genes during Myogenesis JOURNAL Mol Cell 62 (6), 834-847 (2016) PUBMED 27264872 REMARK GeneRIF: Three muscle-specific nuclear membrane proteins, NET39, Tmem38A, and WFS1, direct specific myogenic genes to the nuclear periphery to facilitate their repression during myogenesis. REFERENCE 5 (bases 1 to 1946) AUTHORS Zhou X, Lin P, Yamazaki D, Park KH, Komazaki S, Chen SR, Takeshima H and Ma J. TITLE Trimeric intracellular cation channels and sarcoplasmic/endoplasmic reticulum calcium homeostasis JOURNAL Circ Res 114 (4), 706-716 (2014) PUBMED 24526676 REMARK GeneRIF: TRIC-A and TRIC-B seem to have differential functions in Ca(2+) signaling in excitable and nonexcitable cells. Review article Erratum:[Circ Res. 2020 May 8;126(10):e119. PMID: 32379571] REFERENCE 6 (bases 1 to 1946) AUTHORS Yamazaki D, Tabara Y, Kita S, Hanada H, Komazaki S, Naitou D, Mishima A, Nishi M, Yamamura H, Yamamoto S, Kakizawa S, Miyachi H, Yamamoto S, Miyata T, Kawano Y, Kamide K, Ogihara T, Hata A, Umemura S, Soma M, Takahashi N, Imaizumi Y, Miki T, Iwamoto T and Takeshima H. TITLE TRIC-A channels in vascular smooth muscle contribute to blood pressure maintenance JOURNAL Cell Metab 14 (2), 231-241 (2011) PUBMED 21803293 REMARK GeneRIF: TRIC-A channels contribute to maintaining blood pressure, while TRIC-A SNPs could provide biomarkers for constitutional diagnosis and personalized medical treatment of essential hypertension. REFERENCE 7 (bases 1 to 1946) AUTHORS Zhao X, Yamazaki D, Park KH, Komazaki S, Tjondrokoesoemo A, Nishi M, Lin P, Hirata Y, Brotto M, Takeshima H and Ma J. TITLE Ca2+ overload and sarcoplasmic reticulum instability in tric-a null skeletal muscle JOURNAL J Biol Chem 285 (48), 37370-37376 (2010) PUBMED 20858894 REMARK GeneRIF: Absence of TRIC-A leads to instability of Ca(2+) movement across the sarcoplasmic reticulum membrane. REFERENCE 8 (bases 1 to 1946) AUTHORS Yamazaki D, Yamazaki T and Takeshima H. TITLE New molecular components supporting ryanodine receptor-mediated Ca(2+) release: roles of junctophilin and TRIC channel in embryonic cardiomyocytes JOURNAL Pharmacol Ther 121 (3), 265-272 (2009) PUBMED 19095005 REMARK Review article REFERENCE 9 (bases 1 to 1946) AUTHORS Bleunven C, Treves S, Jinyu X, Leo E, Ronjat M, De Waard M, Kern G, Flucher BE and Zorzato F. TITLE SRP-27 is a novel component of the supramolecular signalling complex involved in skeletal muscle excitation-contraction coupling JOURNAL Biochem J 411 (2), 343-349 (2008) PUBMED 18035970 REFERENCE 10 (bases 1 to 1946) AUTHORS Yazawa M, Ferrante C, Feng J, Mio K, Ogura T, Zhang M, Lin PH, Pan Z, Komazaki S, Kato K, Nishi M, Zhao X, Weisleder N, Sato C, Ma J and Takeshima H. TITLE TRIC channels are essential for Ca2+ handling in intracellular stores JOURNAL Nature 448 (7149), 78-82 (2007) PUBMED 17611541 REMARK GeneRIF: TRIC channels are likely to act as counter-ion channels that function in synchronization with Ca2+ release from intracellular stores COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC172623.3 and AC182435.3. Transcript Variant: This variant (4) lacks three internal exons compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region found in variant 1. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR7652917.164220.1, SRR7345562.3830973.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-405 AC172623.3 7322-7726 c 406-523 AC182435.3 30926-31043 524-1946 AC182435.3 32088-33510 FEATURES Location/Qualifiers source 1..1946 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="8" /map="8 35.08 cM" gene 1..1946 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /note="transmembrane protein 38A" /db_xref="GeneID:74166" /db_xref="MGI:MGI:1921416" misc_RNA 1..1946 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /product="transmembrane protein 38A, transcript variant 4" /db_xref="GeneID:74166" /db_xref="MGI:MGI:1921416" exon 1..405 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /inference="alignment:Splign:2.1.0" misc_feature 282..533 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_144534.2" /note="predicted ORF does not meet quality criteria for protein coding locus with longer protein data" /db_xref="GeneID:74166" exon 406..523 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /inference="alignment:Splign:2.1.0" exon 524..1946 /gene="Tmem38a" /gene_synonym="1110001E17Rik; mg33a; SPR-27; TRIC-A" /inference="alignment:Splign:2.1.0" ORIGIN
attctaactacgcagatgtttaaggacaagattccctcttgtgtgtgctggatgcaggggacagatcgcctttttggctctgttgaacgagttctgacgtccctacggccccgcattttgggctcccggctgctaggagtcccccaccacccctcctctcccgaggggtgggggcaggcggggggcggtgcctggcagtggggcgggctcagtggcgagggagcattcgtcgggcagcggggcgcgggacgcacggggccggggaggcgccctccatcgccatggacctgatgtcagcgctgagcctgggcgagctagcgctcagcttctcgcgggtgccgctcttccctgttttcgacctcagctacttcatcgtctccatcatctacctgaagtatgagccagccccaccaaggccagtctgtatggagccatcctgttcaccttgcagcagactcgctggctcccagtgtccaaggccagcctcattttcgtcttcaccatgtttatggtgtcatgtaaggtgttcctgacagccacacactcccacagttctccatttgatatcctggagggttacatctgcccagtgctgtttggggcaacttggggaggcgaccatcaccatgacaaccatggagcaccacatggcatgggactaggcacccagcactccggcctgcctgccaaggccaaggaagagctgggcgaaggatccaggaagaagaagaccaagaaagcggattaggggttggccccaggaatccactgcgtgcttggtagaaggatgtggactcaaagaaactcagaacttaggggcattcagggctcagaccctcccctccccccgccctgctctctaccaccctcaacttccccatctgcagtttggagccatcagcaattccaagggctgatgtgggctaaattagtgtggaggaattcaacagatgtggaaaaccctgccctctgccagacccctcaaaaggtcacagcctttgggggcacacagtctaggcccaaagccctggctggtaggctcttggttttcattctgtgttctgtctaattatatcttgtaactaaaagaatttaaagccacatggagactcaattatctagatcctctcgagagccaggtgctggggtcccatgtccttccgcactcaggacctccctagaattttgtgactcctgctggacatctttaggcaaatggccttccttctctgagccttctgtttctgttctgtagcatggagaccccaggtcctcctgtgtacaaaagggtctttataatttcaagcagttgcttaagcagcgtgctagtgagaaggagactggagcagcatgaaggacagtggcaggctgcttggtatgtaggccatttgtgtttgaggccagaaggtctcaccagatactcagctgagcatgagcaggcacatttagggcagactgctaacaggaggggggcttgagttcctaggtgcccacaggtaagaggtgtgggtgcagagcagagggtccaagagccaacagccttggttactcacaattgggctctgggtgtatcaggtgtccctcatgcctgatcagcatagttcattcagtcattcaacaaacacacagatccacacatgctcgctatacagtgtcatgctgctcctcttaggagcgagccttatacaggggaagggccatggtcgccaaagtctccagggcacctgagagaggtgagcatggggtcctgctggtctcaggcttatgtgaggctcagatctagttgaagtacccagtgtagcccatttgttgagaaaatgctcctcataactttgcctggaggtagggtaggccctgaggctggaagctcccgagtttcatccccttgatgtcaatcaaagctcagtgtgagtgatcagccaataaatctggtgcgagtaaatcaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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