2024-09-28 09:22:44, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_075094 1863 bp RNA linear ROD 05-AUG-2023 DEFINITION Mus musculus ventral anterior homeobox 2, opposite strand (Vax2os), transcript variant 1, long non-coding RNA. ACCESSION NR_075094 VERSION NR_075094.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1863) AUTHORS Lo Giudice Q, Leleu M, La Manno G and Fabre PJ. TITLE Single-cell transcriptional logic of cell-fate specification and axon guidance in early-born retinal neurons JOURNAL Development 146 (17) (2019) PUBMED 31399471 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1863) AUTHORS Meola N, Pizzo M, Alfano G, Surace EM and Banfi S. TITLE The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina JOURNAL RNA 18 (1), 111-123 (2012) PUBMED 22128341 REMARK GeneRIF: Vax2os1 is proposed to be the first example of lncRNA that acts as a cell cycle regulator in the mammalian retina during development. REFERENCE 3 (bases 1 to 1863) AUTHORS Alfano G, Vitiello C, Caccioppoli C, Caramico T, Carola A, Szego MJ, McInnes RR, Auricchio A and Banfi S. TITLE Natural antisense transcripts associated with genes involved in eye development JOURNAL Hum Mol Genet 14 (7), 913-923 (2005) PUBMED 15703187 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC090647.6. On Feb 17, 2018 this sequence version replaced NR_075094.1. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. ##Evidence-Data-START## Transcript exon combination :: AK044313.1, SRR17784644.32293.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01164137 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-92 AC090647.6 86049-86140 93-1689 AC090647.6 92854-94450 1690-1863 AC090647.6 94575-94748 FEATURES Location/Qualifiers source 1..1863 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 35.94 cM" gene 1..1863 /gene="Vax2os" /gene_synonym="Vas2os; Vax2os1; Vax2os2" /note="ventral anterior homeobox 2, opposite strand" /db_xref="GeneID:574519" /db_xref="MGI:MGI:3583301" ncRNA 1..1863 /ncRNA_class="lncRNA" /gene="Vax2os" /gene_synonym="Vas2os; Vax2os1; Vax2os2" /product="ventral anterior homeobox 2, opposite strand, transcript variant 1" /db_xref="GeneID:574519" /db_xref="MGI:MGI:3583301" exon 1..92 /gene="Vax2os" /gene_synonym="Vas2os; Vax2os1; Vax2os2" /inference="alignment:Splign:2.1.0" exon 93..1689 /gene="Vax2os" /gene_synonym="Vas2os; Vax2os1; Vax2os2" /inference="alignment:Splign:2.1.0" exon 1690..1863 /gene="Vax2os" /gene_synonym="Vas2os; Vax2os1; Vax2os2" /inference="alignment:Splign:2.1.0" ORIGIN
ggaaatgcacctagctttcagtctggctccgcttgatggaaaactcagagctcgaggaggcgaccctgactcgacccggcagaaaagaggagacggaaaactccctccctagaatctggaatgaactccttgtgtctgcggttcttccagcctctctggctttggcaggacactagattctggcttacccttccccggctctcggctctcgtccctggccagccactgtgaccactgctttgccagaccaccagtgtgtcagattcgtttccgttccggaagattggtatttgtatggttattgttttgaaaaaaagaaaacgaattaaattaaggggaaccaaggagagggatatttgtagctgaggccattgcttcagtgtggagccctggttgtgcccttcagagcctcgggccgagagggagtgtgggggctgtggggcccccgggaattagcgcgtggagtgaacgtcggggcaagagttggggtggattagcgggttcaaaagcaggtcagggggagctaagcgtggcgaccaagtccgtgctaggtcaaggtccctggcaaaggctggctcgagcgatctgcaggaagccgtaccagtctgcagctgcccagccagggaccagagaaatgcaacaggaacccatgcttgtctgcaataatttacaggaccccgttcgagctccctggttgaggtgtgctcaccttgaaagacagggtttctcttttacattttaaccttttctttcttttcttctttatgtttgagacaggacctcactccgtagcccaggttggcctccagctcagggccatcctcctgtggaacccctgagatcacaggcgtgtctcaccaagtcccacctctttgtttttatactccctcctttctgaccagataaatacatcgacccacgcaggtagaattttcttctcaagagtctctttctcctcctgacatcgggggccatgtgagtcaaatgggggttggggatttctgagacacaataaaagaatcgcatcctcctcttcccgctcgagtacctgcgatagggagggagagctgggagtagctgagtcgctctttcctttgcgaaagggagagaggtgactctgagccccgaacgtttgtagggccctggatagtcttcccttttctccaaaagactcgtgagttttaacagggaacaaacttggagacgcggtggatttcgaaatcccggtcttgttggtggcctaagaacaatttacaaagcagccggggtggggatgaatcctcgaggtctaccgagggtggtggcccctcccgagtcgcttgggacctggcgtggggcttcttttcctcccgcgctgtgcaggcccagggagtggggtacgcggatggacttggttttgttgaaatccggtgaatctggactcgggtcgggctagcttcacggagtaagcctatccgatccctgcaggggagaagtttcctacttccagctctggggaaagtacggaaggtggcaaggagctgtggaaagcggaggtggcttgggagaggcctgggctgtggagtccccgggcggctcccgcgacttctctggaatgcttccgagctgcaggccctggatgctggcgtgcagggtgtagagcggcagacccggatggaccggctggtgcggtgctcgggtccgagtggagcgggcgttctcgcttcgcggcttgcaaccggcctcacagttcaggcttcagcggcagaaataatgggactgacggcaagaaagtatcccaacgctttcccgctcttctggagctgcctccaccccatccccaccgccgcatccttctttttgaataaatttaccttgaaagta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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