2024-09-28 09:25:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_038085 1305 bp RNA linear ROD 04-AUG-2023 DEFINITION Mus musculus SIX homeobox 3, opposite strand 1 (Six3os1), transcript variant 7, long non-coding RNA. ACCESSION NR_038085 VERSION NR_038085.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1305) AUTHORS Quintana-Urzainqui I, Kozic Z, Mitra S, Tian T, Manuel M, Mason JO and Price DJ. TITLE Tissue-Specific Actions of Pax6 on Proliferation and Differentiation Balance in Developing Forebrain Are Foxg1 Dependent JOURNAL iScience 10, 171-191 (2018) PUBMED 30529950 REFERENCE 2 (bases 1 to 1305) AUTHORS Percival CJ, Green R, Roseman CC, Gatti DM, Morgan JL, Murray SA, Donahue LR, Mayeux JM, Pollard KM, Hua K, Pomp D, Marcucio R and Hallgrimsson B. TITLE Developmental constraint through negative pleiotropy in the zygomatic arch JOURNAL Evodevo 9, 3 (2018) PUBMED 29423138 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1305) AUTHORS Rapicavoli NA, Poth EM, Zhu H and Blackshaw S. TITLE The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity JOURNAL Neural Dev 6, 32 (2011) PUBMED 21936910 REMARK GeneRIF: Six3OS regulates Six3 activity in developing retina by a mechanism via which promoter-associated long non-coding RNAs can modulate the activity of their associated protein coding genes during development. Publication Status: Online-Only REFERENCE 4 (bases 1 to 1305) AUTHORS Geng X, Lavado A, Lagutin OV, Liu W and Oliver G. TITLE Expression of Six3 Opposite Strand (Six3OS) during mouse embryonic development JOURNAL Gene Expr Patterns 7 (3), 252-257 (2007) PUBMED 17084678 REFERENCE 5 (bases 1 to 1305) AUTHORS Alfano G, Vitiello C, Caccioppoli C, Caramico T, Carola A, Szego MJ, McInnes RR, Auricchio A and Banfi S. TITLE Natural antisense transcripts associated with genes involved in eye development JOURNAL Hum Mol Genet 14 (7), 913-923 (2005) PUBMED 15703187 REFERENCE 6 (bases 1 to 1305) AUTHORS Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH and Cepko CL. TITLE Genomic analysis of mouse retinal development JOURNAL PLoS Biol 2 (9), E247 (2004) PUBMED 15226823 REFERENCE 7 (bases 1 to 1305) AUTHORS Mu X, Zhao S, Pershad R, Hsieh TF, Scarpa A, Wang SW, White RA, Beremand PD, Thomas TL, Gan L and Klein WH. TITLE Gene expression in the developing mouse retina by EST sequencing and microarray analysis JOURNAL Nucleic Acids Res 29 (24), 4983-4993 (2001) PUBMED 11812828 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK053722.1, CF737925.1, CF731326.1 and BF461098.1. Transcript Variant: This variant (7) has an alternate and much shorter 3' exon, compared to variant 1. ##Evidence-Data-START## Transcript exon combination :: CF737925.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-24 AK053722.1 3-26 25-717 CF737925.1 1-693 718-1180 CF731326.1 155-617 1181-1305 BF461098.1 1-125 c FEATURES Location/Qualifiers source 1..1305 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="17" /map="17 55.42 cM" gene 1..1305 /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /note="SIX homeobox 3, opposite strand 1" /db_xref="GeneID:100043902" /db_xref="MGI:MGI:1925118" ncRNA 1..1305 /ncRNA_class="lncRNA" /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /product="SIX homeobox 3, opposite strand 1, transcript variant 7" /db_xref="GeneID:100043902" /db_xref="MGI:MGI:1925118" exon 1..340 /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /inference="alignment:Splign:2.1.0" exon 341..490 /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /inference="alignment:Splign:2.1.0" exon 491..535 /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /inference="alignment:Splign:2.1.0" exon 536..1290 /gene="Six3os1" /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os" /inference="alignment:Splign:2.1.0" ORIGIN
aaaaccctcgccactcatgaagaactgaggcaaaaggatcacagatgctgctcggggccagccctatactccctccagtgcctggtctccggtggacccgcggggctctgcagttctctggcggccgcgccttgtaagcgctaagccgggaggagggcgcaggcagggcgcacagctctgagcgcgaccctacccggctcgggcccgcagcaaccccgactgtccgagagcctctccccaagcaaggctctgcgccgccctctgagcccacctcctggccacaacgctgcctgcgcttctccagcccaggccggaagccctatgctgcctcccgaagccggactttctggaagcccatcttcgtatgctcaccagcccaccctcctacgctggtcagagtgagattgctaacctcaagaccccattcaatgccagctttcaactactgctgaagaccaatgtaggtcctggaatagaagaactgcagagtatccggagctggccgaccccagactgattctcaacaggtggctggtgatcagaggagaatcgccaggctgagggggaagcaaggaacatatggacccaagtaggatcctgaaagaatttcgagaagctccgagcccaaatcatacaggccctaagtattggtcaatcaccaggagtgaaacagaaacttagaccacacactcaagtcctgtttctgaatgaggggctcaagtgctaggccacaagtggccgctatggatgctgcattgtggagtcccacctgatccctccttcaaccacgcacctcagactgcaaggagagctagatgagaaggagctggggctcttgcgatctgcagaggcagcacgctggtcaggaagaacccagaacacctgcctcagacacagccagtctgtccacacacaaaaggcagggctgaggggctattaagtcaaacctggagtcacagccccaatgtcctcagacagtccccaaccctctgcagcaatgtggacatgtgtcagtgtggctgaaaagcttcttctctgagctttaacaactttctggtgtaacttctgagagggctgattgcttattcatgtggaagcaagacgcccagtccgttttgcctgtttttgctactctttgttgtctcggggggagtgttatggtagctgcaaatggcttctcccgtgacatttgctgacattcagtgaagtacatttatcagcgctcgcgagctcacctccgcacatgcaatccattttgttttgttcttcatggtaacccccttcccaacaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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