LOCUS       NR_030769               4345 bp    RNA     linear   ROD 05-AUG-2023
DEFINITION  Mus musculus NK2 homeobox 2, opposite strand (Nkx2-2os), long
            non-coding RNA.
ACCESSION   NR_030769
VERSION     NR_030769.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4345)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   2  (bases 1 to 4345)
  AUTHORS   Amaral PP, Clark MB, Gascoigne DK, Dinger ME and Mattick JS.
  TITLE     lncRNAdb: a reference database for long noncoding RNAs
  JOURNAL   Nucleic Acids Res 39 (Database issue), D146-D151 (2011)
   PUBMED   21112873
REFERENCE   3  (bases 1 to 4345)
  AUTHORS   Tochitani S and Hayashizaki Y.
  TITLE     Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic
            differentiation
  JOURNAL   Biochem Biophys Res Commun 372 (4), 691-696 (2008)
   PUBMED   18538132
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK045921.1 and AL805918.5.
            
            On Feb 27, 2016 this sequence version replaced NR_030769.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HG975423.1, AK045921.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849380,
                                           SAMN01164131 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1363              AK045921.1         2-1364
            1364-1364           AL805918.5         118375-118375       c
            1365-1598           AK045921.1         1366-1599
            1599-1599           AL805918.5         118140-118140       c
            1600-3854           AK045921.1         1601-3855
            3855-3855           AL805918.5         115884-115884       c
            3856-4345           AK045921.1         3857-4346
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 72.63 cM"
     gene            1..4345
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /note="NK2 homeobox 2, opposite strand"
                     /db_xref="GeneID:100313531"
                     /db_xref="MGI:MGI:3652259"
     ncRNA           1..4345
                     /ncRNA_class="lncRNA"
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /product="NK2 homeobox 2, opposite strand"
                     /db_xref="GeneID:100313531"
                     /db_xref="MGI:MGI:3652259"
     exon            1..278
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
     exon            279..444
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
     exon            445..609
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
     exon            610..808
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
     exon            809..3986
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
     exon            3987..4345
                     /gene="Nkx2-2os"
                     /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgtgctgcagcgactgcgcgctgtaggcggaaaaggggatgcctgcctggaaggtggcggctgccaggtcctgggctttgagcgcgtggcacggtttgccgtccctgaccaagaccggcactgccacacggcgcggcgagggcagaggcgtcacctccatacctttctccgcccgggcacgtttcatcttgtagcgatggttctggaaccagatcttgacctgtgtcggcgtgagacggatgaggctggccaggtgctcgcgctcgggcgccgacaggttttaaagtggctgcaactcctcttcaagccttgctgtgccctacagtgtgatttccatgctattcccaccaacagaggaactttgtgctacttcttttccaatcttggcccaagagcatgatggaactgagcatgtgtgatgtctgagtaccaagccaccaaagattatccctacctacatcaaagatgatggccaagatggcaagacaactgggtggtcagctggctgagtgctccttttagtgcctgcatgggaatcacggaaggaatgactcttcacattcagtctctgtcagctttcagtctgagtttgggaccagtaagtgttgggtttgggcccttagtggcatgggtaccatgatgagagtgcataccgaagaaggcttggcatctcatagcagccagggaataataaagatgggaggggtcagagttccagaacctccttcaaggacccctcttccaacgatctcaccgcctcctatgcatttcacaccccatagcaccgcaagctggagactttactatgctggaggttattggtgcaacatacatctcattttcgtggtgacttgtcacatgaggtcagagggggaggctttccacgcatggtgacaagtgggtgctcagatgtggggccatttcccaccgtggattttcagactacagccgtgcctgtgagaacaaagtcaaaggaagctgaggagcagagaagatgggacctgttcaggtgaaggctctccagcagccagtgtgtgaaatagctgctctacttaaccgttgcgcgaggctgtgccaggctttgtggtactttgccctcactacctgttagtagctgagaggagatcatgcttcggaaaccaagccacttggttgcagatgttcagttcaaactatgcattacataacagtcattatttaacttcagtgctttagcgccctccagtggaatatggatgtcatcacatggaatgcttcaaggatgaaatgatgtcttgaggcatctcctggcacagaatgatcaccaccttgtgagtcttatccactgacagtaacatcctaaagtctctggtcctctcccctctagaagattccccagcctccaaggtggcaacctccatcaagatgctgatagtgcttgtagtttccggcagcaacttgccagacccagtggtccagatcttccttagtaagtgagggcaagattagagagaggaacacttccttatataaacggagaagtttgggttcagaaaggagagtcatgtaatttgttacaccatgaagttgacagcagagctagctccagttctcttgtctcctctgatgtctcttctcagagacatgcattctgacaaaaaaaatggaaggcgggggttgcttgtggaacagcggaattggaaatgttgtcagaagactaacttgctccagtgagagaatgggcagagttcagttatgtgcttcctatgacgttttagtcagtggccgattgtgtgtgaatgacagcatcaccagggagaccaagtagggagtagccacaccatttagatatatgtaaatgtactctactggttataatcacttttaaagtgtgtgtacacgtgcgtgtgcatggggggggggaaggtagaggctcatgtacgcctgagaaagtcagatgatggcctcaggtctcaggagtgctgtctatctccctttcgaaacaatttcttattagcctcacactcaaccaattatgttatacagctaaacagcaagtctaggaactctccccttgtcccagcctccccagtgttgagattacctatatacgccacagtacacagctctttttccttggggtctgggagattgaacccaggtcctcaggagattgaacccagtgagcattttaccaactgagtccatttccgtaactctgtggtccatcttgattgtcaccctgagggtaaggagagctacttaggagacacacctttgggtatatctgttacagtgtttccagaaagtttgctctgagatgggagggcctgccccagatgtttatggccctgtttcaccgctggggcccaaggatgaataaggagaaagtgcggtgagcaccgtcctttgtatgttcgtttctctcagctgcctgagtgcaaactcaacttggccagacttttgttgccttccttcctggctgcgatggattgtcccgtcaggctataagtcaaaataaaatctttcttctttatgtttcgtttgctgagcattttatcagcacagtgagatagaccaacgaatacctcaaacagcccatgatgtttgcacagtgacacaaggtctaccaacacatttctcaggactgatctttcagccacacacgactctggaaacactccctgtactcaggaggccacagtagtgacacagataacctttgtcgcctttgccttggagtgggtgccacagggcagagactactggaagcccaaagagcaacagaaaggaggcacctctgcaggaggctagagatggagacactctttggaggcaggcagctgccctccctcacatagaaacagccctctctcttcttcaatattgacctgcagagaaagaaaaaaagaacccatcttaatactttttcagtagatcatgaagcagtttatttaatattatttggataacaagcctccacatgaatgggattcgaatgtcaattgtcttagggggaaaaagatttattggttggtaaatattgagaaaggaacgctgataaagaccggcttcagctgcggcctcggccggggacgggagaacaggcctgtgttgtattttggggccctgggaaggcaaaaactggtgaatgtctgcctttgttggtgggtgtaaaagtggagcccaccacaaataatttcttatttctgttcacatagattttaaattatgtagctcccctaccttgttaagcattaaagcggtcttgtttaaggaaaaggcacttaaataatgaagcttatgtagtttgttttcagacatcaatatctggctttgagtggcacaaagagataaaggaatgtggattcacggcttactgagatgcttggcaattctaattcaacccgactgcgaatggacacaagactgttgtgactcctcctgaggagagagaaggctgggtgagcacgtggtttggggaaattgtattctcttcttcaagttcttctgtttccgaacatttaatcccactgttctcatctttaatgaaggtctctttggtaaagaatctttttcctggaatggcagagggcaacagaagctggattcagaagcacacagagctggggaatgtgcgctgcagtgggactcagacagggaaaggctgccatcttgtggtcggcttggtgctctgcagtctgtgaactgtccctctgcagaagccagcaaccctggagggaaggagtctgaatgctggatttctgcaggacaatgtggatgcctttaggaattactctgactgtgttcaggtgccctccgaggtagcctccagcgggtattctgcacgtatatcgtcattcctggggcaaggctaggcctcacagacacttggcagactgagcaggacaaccagcaaacagtgagaacaaacagccagacacatatgcaccatgtacttactgtgttcctggaaggcagccaactgaaaaacacccaggacaagaaaaagtcagatggatggatgaacactacccacgtccacaccaagtcactgggaagcattcgccttacttagaagaagctcctactttttacttcctgctcatcagcttcacagaaggggggggtgaataaaaaaagttagaggaatcagaagacccctctgcagctctgcagcaatgtcatgccatcttttcttgataactgcagacaattcagcttgaccaggatacccttggatgggagtttggaacattcctaaacatgcttatggttgttttccttctggttgtgtggtcttcaactgataattccacagtactaacatgtaattttagtgaattaaactcaagccatccaatt

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