2024-09-28 09:29:12, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_027899 794 bp RNA linear ROD 05-AUG-2023 DEFINITION Mus musculus homeobox D3, opposite strand 1 (Hoxd3os1), long non-coding RNA. ACCESSION NR_027899 XM_984549 XM_992510 VERSION NR_027899.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 794) AUTHORS Aboudehen K, Farahani S, Kanchwala M, Chan SC, Avdulov S, Mickelson A, Lee D, Gearhart MD, Patel V, Xing C and Igarashi P. TITLE Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling JOURNAL J Biol Chem 293 (24), 9388-9398 (2018) PUBMED 29716997 REFERENCE 2 (bases 1 to 794) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 3 (bases 1 to 794) AUTHORS Feenstra JM, Kanaya K, Pira CU, Hoffman SE, Eppey RJ and Oberg KC. TITLE Detection of genes regulated by Lmx1b during limb dorsalization JOURNAL Dev Growth Differ 54 (4), 451-462 (2012) PUBMED 22417325 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL928644.12. On or before Jun 27, 2009 this sequence version replaced XM_984549.1, XM_992510.1. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. ##Evidence-Data-START## Transcript exon combination :: AK007148.1, BY707232.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN00849384 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-425 AL928644.12 200638-201062 c 426-556 AL928644.12 199203-199333 c 557-794 AL928644.12 194976-195213 c FEATURES Location/Qualifiers source 1..794 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="2" /map="2 44.13 cM" gene 1..794 /gene="Hoxd3os1" /gene_synonym="1700064D17Rik; 1700109F18Rik" /note="homeobox D3, opposite strand 1" /db_xref="GeneID:73429" /db_xref="MGI:MGI:1923875" ncRNA 1..794 /ncRNA_class="lncRNA" /gene="Hoxd3os1" /gene_synonym="1700064D17Rik; 1700109F18Rik" /product="homeobox D3, opposite strand 1" /db_xref="GeneID:73429" /db_xref="MGI:MGI:1923875" exon 1..425 /gene="Hoxd3os1" /gene_synonym="1700064D17Rik; 1700109F18Rik" /inference="alignment:Splign:2.1.0" exon 426..556 /gene="Hoxd3os1" /gene_synonym="1700064D17Rik; 1700109F18Rik" /inference="alignment:Splign:2.1.0" exon 557..794 /gene="Hoxd3os1" /gene_synonym="1700064D17Rik; 1700109F18Rik" /inference="alignment:Splign:2.1.0" ORIGIN
agagatgcctggttgagggcagctggcggacaagtgatcacaccacccacccttgtctgatgccacgcacgctgagcgctgagcgagctgaggtggaaggcggggcagaagaacgggtggctcttgtgtcctcccattcccctcccacccagggcatgggcggcatcggcgaagccagcgagacgcttgtcctacagcgcctcctcctggacaaagctccagacaaccgaaaagggacaccaccagccctagaaaacctagactaggcacttccttcctgggacatcagaagttgattctgccacgtccactggagaggcaaaaaggagtccaaaagtccttgaggctacctcttaccgccccacccccagctcagacaacaagcctgtgacccagaagcgagcatctcatctctccttgattagactttccagagactgcactcccagctcttgtgtccacccaagaagaaaccaaggccaggacattggctccccagtctataaatagaagtttggacccaggacgctgggagttttgcccagaaacctctaagacacccaaggattcagcaaacatccaagatatggaggagacactagatgtgaattcttatgcagtgaattaaacaatatgttattacacaaggaaatgggcaagctggtgcttattccctggtcgatacacatagaagtgggtaaagagattgttcaattctaaaacattctaaaaattaatctcaatttgcctctgtatcatctgccctctatccaaataaaagcagagcttatccc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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