2024-06-29 21:35:01, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_183201 5989 bp mRNA linear ROD 05-FEB-2024 DEFINITION Mus musculus schlafen 5 (Slfn5), mRNA. ACCESSION NM_183201 VERSION NM_183201.4 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5989) AUTHORS Nakagawa,K., Matsuki,T., Zhao,L., Kuniyoshi,K., Tanaka,H., Ebina,I., Yoshida,K.J., Nabeshima,H., Fukushima,K., Kanemaru,H., Yamane,F., Kawasaki,T., Machida,T., Naito,H., Takakura,N., Satoh,T. and Akira,S. TITLE Schlafen-8 is essential for lymphatic endothelial cell activation in experimental autoimmune encephalomyelitis JOURNAL Int Immunol 30 (2), 69-78 (2018) PUBMED 29528433 REFERENCE 2 (bases 1 to 5989) AUTHORS Mavrommatis,E., Arslan,A.D., Sassano,A., Hua,Y., Kroczynska,B. and Platanias,L.C. TITLE Expression and regulatory effects of murine Schlafen (Slfn) genes in malignant melanoma and renal cell carcinoma JOURNAL J Biol Chem 288 (46), 33006-33015 (2013) PUBMED 24089532 REMARK GeneRIF: several mouse Slfn genes are up-regulated in response to IFN treatment of mouse melanoma and renal cell carcinoma cells, including Slfn1, Slfn2, Slfn4, Slfn5, and Slfn8. REFERENCE 3 (bases 1 to 5989) AUTHORS Bustos,O., Naik,S., Ayers,G., Casola,C., Perez-Lamigueiro,M.A., Chippindale,P.T., Pritham,E.J. and de la Casa-Esperon,E. TITLE Evolution of the Schlafen genes, a gene family associated with embryonic lethality, meiotic drive, immune processes and orthopoxvirus virulence JOURNAL Gene 447 (1), 1-11 (2009) PUBMED 19619625 REFERENCE 4 (bases 1 to 5989) AUTHORS Neumann,B., Zhao,L., Murphy,K. and Gonda,T.J. TITLE Subcellular localization of the Schlafen protein family JOURNAL Biochem Biophys Res Commun 370 (1), 62-66 (2008) PUBMED 18355440 REFERENCE 5 (bases 1 to 5989) AUTHORS Geserick,P., Kaiser,F., Klemm,U., Kaufmann,S.H. and Zerrahn,J. TITLE Modulation of T cell development and activation by novel members of the Schlafen (slfn) gene family harbouring an RNA helicase-like motif JOURNAL Int Immunol 16 (10), 1535-1548 (2004) PUBMED 15351786 REFERENCE 6 (bases 1 to 5989) AUTHORS Le Bras,S., Cohen-Tannoudji,M., Guyot,V., Vandormael-Pournin,S., Coumailleau,F., Babinet,C. and Baldacci,P. TITLE Transcript map of the Ovum mutant (Om) locus: isolation by exon trapping of new candidate genes for the DDK syndrome JOURNAL Gene 296 (1-2), 75-86 (2002) PUBMED 12383505 REFERENCE 7 (bases 1 to 5989) AUTHORS Schwarz,D.A., Katayama,C.D. and Hedrick,S.M. TITLE Schlafen, a new family of growth regulatory genes that affect thymocyte development JOURNAL Immunity 9 (5), 657-668 (1998) PUBMED 9846487 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK036486.1, AK040359.1 and AL603745.16. On May 30, 2009 this sequence version replaced NM_183201.3. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK036486.1, AK040359.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-14 AK036486.1 2-15 15-2558 AK040359.1 2-2545 2559-5989 AL603745.16 77598-81028 FEATURES Location/Qualifiers source 1..5989 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="11" /map="11 50.3 cM" gene 1..5989 /gene="Slfn5" /note="schlafen 5" /db_xref="GeneID:327978" /db_xref="MGI:MGI:1329004" exon 1..94 /gene="Slfn5" /inference="alignment:Splign:2.1.0" exon 95..160 /gene="Slfn5" /inference="alignment:Splign:2.1.0" exon 161..1188 /gene="Slfn5" /inference="alignment:Splign:2.1.0" CDS 189..2843 /gene="Slfn5" /note="expressesd sequence AI956840" /codon_start=1 /product="schlafen family member 5" /protein_id="NP_899024.3" /db_xref="CCDS:CCDS25153.1" /db_xref="GeneID:327978" /db_xref="MGI:MGI:1329004" /translation="
MSFLEDLELNFAECIQDGGKATLGVRQREEMDTTHCMKQNEIISQAVCALLNSGGGVVRVEIENGDYNFERDGVGLNLPPLFRNHLDEMLYGKLFLIYVSSWDVAASHVRLATLCSNLYHRCGTFTEVMDPEKALKFLKRVQDPRILGDSDSLNLQEAPVDDAQMILASDLFHSPQLQYLEKLNFTKSSHVEFQMFSADLSQGIRERLPKCVSALANSEGGYVFFGVHDETRHVIGCEKEKINCTNLKSTIDACIRKMPVYHFCGQNHKVQYELKFLEVYDKEALHGYVCAIKVERFCCAAFAKAPDSWEIKDNNKKPLTANDWASRMIEINPDLSSFPQMIPWKSMLNTTPCSKTVFTHKYLKCVEDLQKDYFPVSPNRITYTPESVYKDLFADYRGLRNLINMEMRCFSQGILIFSHSWAVDLGLQRRQDVICDALLISPNNVPILYTICNKWDLGNRHYSMKVARTLKQKLVNMGGYPGRLGIIPLVLPLGSHQRVRNDLEMPVYPESYNFITTQQVEALLQSLVIILFGFRPLLNEELNLESETVALLSDQQYGLLSTNLSKHREMFVHGLPGSGKTTLALMIVGKIRNVFNCQADNILYICENQSLKRFIVRKNVCQAVTRKTFMKNTFDNVQHIIVDEAQNFRTEDGNWYAKAKAITQRARDGPGVLYIFLDYFQINHLCCSGLPELQHQKPLLKLTRMLRSGDNITSYLQDIMHQIRENPPPNVPQEALMVGEELEWGPDVTGNLEITDNLNLEQMSVYVAEKCQSLWRSGYFTDVAVLFTRARDIEKCRDKLLLAMRRRSMSQLAEEPSLLVQVREGLDSLGSHVVLESVHRFSGMERSIVFGIIPMGSETAIFYNALLCLASRARTHLYIVKVVF"
misc_feature <315..1172 /gene="Slfn5" /note="hypothetical protein; Provisional; Region: PHA02782" /db_xref="CDD:165147" misc_feature 1899..>2465 /gene="Slfn5" /note="Schlafen group 3, DNA/RNA helicase domain; Region: DUF2075; pfam09848" /db_xref="CDD:430875" misc_feature 1899..>2123 /gene="Slfn5" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(1914..1934,2115..2117) /gene="Slfn5" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" exon 1189..1314 /gene="Slfn5" /inference="alignment:Splign:2.1.0" exon 1315..2038 /gene="Slfn5" /inference="alignment:Splign:2.1.0" exon 2039..5989 /gene="Slfn5" /inference="alignment:Splign:2.1.0" ORIGIN
cacagggtagaggtctccactctggacccaggacatcagctctgattccaggagacggggcgccctgcgggctgcggaggacagactccggcggtttcctggaggttccagcaagacaccatctcaccacttgccgctctagagctcaacctttggccaggaaaagatttcagctaaaggcggagaagatgagtttcctggaggatttggaactgaactttgcggaatgtatacaagatggaggaaaagcgacccttggggttaggcaaagggaggaaatggataccacacactgcatgaaacagaacgaaatcatctcgcaagccgtgtgcgctctgctgaattccggtggcggagtggtcagggttgagattgagaacggagactataattttgagagggatggagttggcttgaatctgccaccattgttcagaaaccatttagacgagatgctgtatggaaagctctttttaatatatgtgagttcgtgggacgtggcagcctctcacgtgaggctcgctaccctgtgctccaatttgtaccacagatgtggaacatttactgaggtcatggatcctgaaaaagccctgaaattcctcaaaagggtccaggatcctaggattcttggtgactctgactcgctaaatctacaggaagctcctgtagatgacgctcagatgatcttagcttctgatttgtttcatagcccgcagctccagtacctggaaaaactcaacttcacaaagtcctcacacgttgaatttcaaatgttctcggcagacctttcccagggcattagagagagacttcccaagtgtgtttctgcacttgccaattctgaagggggctatgtgttttttggtgtgcatgatgagacccgtcatgtcattggatgtgaaaaggaaaagataaattgtaccaacttgaaatctactatcgatgcctgtatcaggaagatgcctgtctaccacttctgtggacaaaaccacaaagtgcaatatgagcttaaattccttgaagtgtatgataaggaggccctccatgggtatgtctgtgcaatcaaggtcgaacgattctgctgtgcagcatttgccaaagcgcccgattcctgggagataaaggacaataataagaagccgctaactgcgaatgactgggcctctcggatgatagaaatcaacccagacctttccagtttccctcagatgatcccctggaagagtatgttaaacaccacaccctgcagcaagaccgtgttcacacataaatatttgaaatgtgtggaagacctgcagaaggattactttccagtgtcacccaacaggattacatatactccagagagcgtctacaaggacctcttcgcagattacagaggactaagaaacttaataaatatggaaatgcgctgtttctctcaagggatattgatcttctcccacagctgggctgtagatctaggtcttcagaggaggcaagatgtcatctgtgacgctcttctgatttccccgaacaacgttccaatcctgtacaccatttgcaacaagtgggatctggggaacaggcactattccatgaaagttgcccgtaccctgaagcagaagctggtgaacatgggtggctaccctggaagattaggcatcattcccttggtcttaccactgggttctcaccaaagagtaaggaatgacttagaaatgccagtgtaccccgaatcctataacttcataaccacacagcaggtggaagctctgttgcaatctcttgtgatcatcttgtttgggttcagacccctgttaaatgaagagttaaacttggagtctgagactgtggccctgctctcagaccaacagtacgggttgctttcaactaacctgagcaagcacagagagatgtttgttcacggcttacctggatcagggaagaccactctagctctcatgatcgtggggaagatcaggaatgtgttcaactgtcaagctgacaacattctttacatctgtgagaaccagtccttgaagaggttcattgtgaggaaaaacgtttgccaggcagtgacacggaaaaccttcatgaaaaatacctttgataatgtgcaacatatcatcgtggacgaagctcagaatttccgaacggaggacgggaactggtacgcaaaggccaaagccatcactcagagagcgagagatggcccaggagttctctacatttttctggattactttcagatcaatcacttgtgttgcagtggcctccctgagctccaacaccagaagccgttattgaagctcaccagaatgctccgcagcggagacaacataaccagctaccttcaggatataatgcatcaaatcagagaaaatcctcccccaaatgtcccccaagaagccttgatggtgggtgaagaacttgaatggggtccagatgtcacaggcaacttagagattactgataacttgaatttggagcagatgtcagtctatgtagcagagaaatgccagagtctttggaggtctggctatttcacggatgttgctgttcttttcactagagccagagatatagaaaaatgtagagacaagcttctgctagcaatgaggaggaggtccatgtctcagctcgctgaggagcccagtttactagtgcaggtcagggaggggttggatagtctgggtagtcacgtcgtgttggagagtgttcaccgattttcaggcatggaaagaagtattgtgtttgggatcattccaatgggatctgagacggccattttctacaatgctctgctctgtctggcttccagggcaaggacacatctgtatattgtaaaggttgtgttttgataggaagatgccagttttcagttagcttgggttggtctctagctgtctttgaagctctttgatctaaacatttaagcaccaaaaacatttcatgtacaatcagccacactcagggcaagcaaatatgagtatgggggatgtagacagtaggaagagacagcagagcaattagctggcactgagatatcctttctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtatgtgtgtgtgtgtatcaggaaggactggttgtttgaggtaggcaggaaagagctaattatgagatgactgctgacttctcgtagactcagatattttccttgtttttaacacagccaccggcagaaatgcttgatcttggtgtgtggagggagcatgaaggggagagggggagagagtgtgtccatctttagcaggacatagtttgaaatgtaagttcacaaactgcaagctatgatttcagggtgagtccagttcagtttagcttgtcgagttgcttcctgttttgcctttcatcggcattgctgtttctgatctttgccttctacatgacttatttattcagaatctttgactccgccttaatactattcctgtggggacccagagttactaccgtcaaagtgccaaagtgtgggtgcagtggtttggaaggtagagggccgaagaggaagaatgtacagagtctaagcctggcatcactccacacttaatttagtaaccacagtatgcaaacataagtcaaatatctctgctctctgtgcgctccccagttcaaacagcctttcgaaggccgttgctgaaaaaatactcatttgtcatttgctttaggtctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcatgtgccaccacgctcggcttctctgaaactcaatatttagagccaaacagagcaaacttttctgggagacacaaacaaacaaaaatccagagttcatttccagggatgatttgcaggagcaaatcatgaaaacttaaggaaaatgaataaacatagagagtatgatataaattgaataacttagagaaaaaaaatcacacattctaatgggtggatcggaacctaccatgtttatcagagagtgtgtgggtatgggtgagtgtgggtgtggataataatcagaaaaaaaagacaaagaagcttggggaaatggagggctggagagtagggcatcaggacacatgtgctatgaagcagaaaggatgctgtggggagatggaagtggagtcacaagggaaggctcagggaggggaggggcacagatattagcaaaatactgtaaaaaaataaacttgaacatagaatcggtttgctttaggcatctagttacattcttagagaatttatatcaaagaaatttacttctagccaggaagtgatggcacacacctttaaccccagaactcagaaggcagaggcaggtggatctctgagttggaggccagcctggtttacagagtgagttctaggacatctaaggttatacagaaaacccctgtctcaaaaagcaaagctgagccaagccaagccaagccaaaccaaaccaaaccaaaccaaaccaaatcaaacccaaaaaccaccatcaacaaaaaaactccaaacaaatgacaaagagccaggtagtggtggtgcatagctttaatctcagcactatggagacagagacagaaggatctcttaagtttgagctagcctggtctacagagtgagtgtcaggatagccagaaaggtcaagaaacaatatgctggggaaatgctggcagcaaatgtcataaatattttttccctaaagtttctattcatggtagtttaatcccagcactcaggaggcagaggcaagtggatctccgtgagtttgagtccaacctggtccacatagtgagtttcgggctaaccagggttacatactgagaccttgtctcaaaatttttttttatacataaaagaaaaatttccgggctggtgagatggctcagtgggtaagagcacccgactgctcttccgaaggtcaggagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacgagatctgactccctcttctggagtgtctgaggacagctacagtgtacttacatataataaataaataaataaataaatcttaaaaaaaaaaaaatataaaaaaaaaaaaaaaaaaaaaagaaaaatttccaagattaaaggaaaactggacaaagaatttgacaggaagagcacagaaggagtttaaaaagctcctacacatgggggagacatcccttacggtggcatgagtgtcacataaccaggtgtgtgacaacatgctgtttggagagaaagacctggcaatggccatgatatgcttggatgtttgtaaccttttaccctgagattcattcctaaggaacttattctgcacagacagcttgcacacatgtaaaaagcttctgggtcgacgtatagagttttgcttctagtagcagaaagcacagcagtagtaaacacaatacagatgagttgaagggagtaatttacagaaaatcacaacacaccatcatatcacgaagccataaaaagtgagatcgcccttgtatttatgtggggccatctctaagatgttctgtattgtgaccaaagtctacctatcctgtgcctctagggccgacacacatgcttgcagatgctttcaggattttttttttttaaataaaccttaaaatctctggagcaggggcatcggtgcccagggagaaagacagcttctgctcttttggactctaggttctctaccatgtggcacttgatgaagttttgctttgcatatgtttttacttataaatgtaatggatttataaatgactttctcagtttttatcaacctgtatcctggtaaacatttcataatcatagtgggtattaatagtgggtagtgaatggggaatttgaaaactatacaatgtaggatgtagaagtgctgacacactgttcaagctttttttaaaaaataaaataaaggacataagatattgcaac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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