2024-09-28 09:28:57, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_175136 5411 bp mRNA linear ROD 04-APR-2024 DEFINITION Mus musculus ring finger protein 122 (Rnf122), transcript variant 4, mRNA. ACCESSION NM_175136 VERSION NM_175136.3 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5411) AUTHORS Bedogni,F. and Hevner,R.F. TITLE Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development JOURNAL Front Mol Neurosci 14, 686034 (2021) PUBMED 34321999 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5411) AUTHORS Wang,W., Jiang,M., Liu,S., Zhang,S., Liu,W., Ma,Y., Zhang,L., Zhang,J. and Cao,X. TITLE RNF122 suppresses antiviral type I interferon production by targeting RIG-I CARDs to mediate RIG-I degradation JOURNAL Proc Natl Acad Sci U S A 113 (34), 9581-9586 (2016) PUBMED 27506794 REMARK GeneRIF: RNF122 suppresses antiviral type I interferon production by targeting RIG-I caspase activation and recruitment domains to mediate RIG-I degradation. REFERENCE 3 (bases 1 to 5411) AUTHORS Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S. TITLE Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method JOURNAL Genome Res 11 (9), 1553-1558 (2001) PUBMED 11544199 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC109163.16. On Feb 8, 2019 this sequence version replaced NM_175136.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC038399.1, AK085376.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-346 AC109163.16 96302-96647 347-503 AC109163.16 102906-103062 504-549 AC109163.16 109327-109372 550-591 AC109163.16 109641-109682 592-671 AC109163.16 112730-112809 672-5411 AC109163.16 113054-117793 FEATURES Location/Qualifiers source 1..5411 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="8" /map="8 17.97 cM" gene 1..5411 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="ring finger protein 122" /db_xref="GeneID:68867" /db_xref="MGI:MGI:1916117" exon 1..346 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" misc_feature 202..204 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="upstream in-frame stop codon" CDS 322..786 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="isoform 4 is encoded by transcript variant 4; ring finger protein 122 homolog" /codon_start=1 /product="RING finger protein 122 isoform 4" /protein_id="NP_780345.1" /db_xref="CCDS:CCDS22220.1" /db_xref="GeneID:68867" /db_xref="MGI:MGI:1916117" /translation="
MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV"
misc_feature 439..501 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="propagated from UniProtKB/Swiss-Prot (Q8BP31.1); transmembrane region" misc_feature 592..729 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order(595..597,604..606,649..651,655..657,664..666, 673..675,706..708,715..717) /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:438338" exon 347..503 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 504..549 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 550..591 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 592..671 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 672..5411 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gtcagttttcggaatcccagcgcgcactgctcagcgcagtgggacccaagcccggcttcgtgtcctggctactgccttctcggccgggcatcccggctctctcggctgccctcccggcccgggccctcggtagggcttcgctccgaaaagactttgcttcctcctctgccctctttgttgctctgcaaaccggcctctctgtaacccttgactccactcctccgggagttgcatctccatcccggcggtctcagtgcacagcccctccagctccaacaccttgcctcggtttgctcccggaagccgaccttgacttcattgatgcacccattccagtggtgtaacgggtgtttctgtggcctgggactggttagtaccaacaagtcctgctcaatgccaccgatcagtttccaagaccttcccctcaatatctacatggtcatcttcggcacaggcatcttcgtcttcatgcttagcctcatcttctgctgctacttcatcagcaaactccggaaccaggctcagagcgagcgatacggctacaaggaggtggtgcttaaaggtgatgctaagaagttacagctctatgggacctgtgcagtttgcctggaagacttcaaggggaaggatgaactaggcgtgcttccatgccagcatgcctttcaccgcaagtgtctggtgaagtggctagaagtacgttgtgtctgccccatgtgcaacaagcccatcgcgggccccacggagacctcgcagagcatcgggatcctgctggatgaactggtgtaagcgctcctggcacatggaccctgggaaagactgccgactttgggtacctgggtttctctacacaatgaacaagactcacacacacctaaaggcaaggatgacagagccgagcttctcccagcaccgcaggaccagtaccagacttgtccagtctccgcctcccagggcttctctccgttatccatttccaatggcctcatccaggtagactgctctatcctggcactggactgaccgtccatccagccatctccacccacctcatctttgccctgggaaggagtccactgggtgactgtgaccatgaacgcctccctttggacaacaagcgactctgaccttgaaaggctctgccccacccatgtccttcactcctgccagagctttccttgggatggtttccaagggaaaggagagaaagatcaagaaaccaagacgaaaggctctgtgtgaagtcaaggaaagcagggccctaaaaaagggaaaaatcaatgtttacatgggatgccggaaacaaaggccagcctcgccctggctgactgcagggtgatgggaccagccctcccgttaggatctgaggtgctattcattctctccctggccctgcttaatctcagagccttctagtcatcgttggtttggaagagacccctctctataggaaggggtctaatcctcaagcccattgtcaggggctttttttttttttctttttggaagcaaaacgggcctcaggctggggatggttgggaggataccatagtgcagatgtctccttcccctctgtaaatagtatttttatacttcatcttcaccatcaccatctcaggctttacacgtgcagcccctcccccacccaggatggaggggggggctgtggagtgtccccttccttccctgaacagggcggctgagagtgggaaaaggttatgtatttaaagaaaattaaatttaataacatgtttctctaatcaaatttttggcttgtggttgtggcctgtgccaggagagggaacagagctctttacctgccttcccccagtcagaccatacttgaggtttctaatccttaacaaaacctgagggctggacatctatctcaacaatagagtgcttgggtaacatgctcaaggccctgggctcagtttttggaatggaaaaaaaaaaaaaaaaagtggggagggaggattaacttattgaacactggtataaaataagatctgatgaagccaggatcaatcgttggaagttttagaaacattgtaaagttgatttcaagcacagcattcactcaactgacttgaattctacctggtggttgattgtcagtgatctggcgacctcagaggcccatgtagctaccctggcaccccatctctttactaatcctgtgtcgctgacagtccctccctggcacatcctagcctcctacacacatctagaattccatgtggtagcaacaggtatgaccctgcgtgcatccagatcctccacccacagcctccagcttagctttgccagtttcccaaggggcctgctgtcaacagtgagtgcgatcagaatgggatggtgttgggaacacctttcttaagcataaggtaactagaccctggttggcccttgcttgggagcacaaatcgatgccagtcaagcaggcagcacgccttgggtgctgagctcaggaaagccatttgctgagcatggtttggattgatgtcagctgtgaaaaagctacccatcattgagtactagatacctggagtaggtatagtgctgtcttactcagccattgtcttatgcatcttggacaacaccaaggtgtaattgggtacctgactatgggctcttctacaggaaggtgcctttactctttacattaagtgacccctgcttgctattgtcaaccttaagagaaacagatctctctccactgggtcaccacttcctcttctagcagtgatagtctggaagtattgaggaattttgatgtattttctcagccgatttcagcctacccctcagttcctgctgcaggtggattcactggtggagaaagtaatcaggttggctttgtatctcccacctcatcatctctccttgcaactgggagggttcatcagtgttagcatcctgatgaaaatgttagcacgaaaaagcttgtttcacagctttcaaaacagtgttaccaggtcaaaatgatgtgggggcaggaaataccttttattccccgtgcttctattgaacctgggtggtatatattacagagtacacagaagggaaaatgatactggttagctgatcagctcaactggcagccgctaagcacaattagacactatgtccccaattcacacagtcacctgtgaagtcttgtgacttggttaagcctttttagaacacctgctgcctggtttggccacttgacaggcaaatcctgaccttggcgaaatggtgtgagcactgtgcttgggtggcaagctcacataatcgagatctttactcagctgtcttttcagcagcagcccgagtgtatattgccaagacatgatgctcaatcagcagcccgagtgtatgccaagacatgctcagtctagggagcagtaatgtggacattgactttgattaaccagactgtggggaccagagagttcaaaccattctgtatgaactgaggtgggaaagacagtaggttagaacataaagggaggaagtactgtgtggaagccaggaacaggattggatagagtaagcaccctgaactttatttacataaaacttaaaaaaaaaaacccactatgttccatctgagaactaagcaaattattctctcctctgggtcctatatatagccacaggcagctacaatagacctataactattcaaattagcaaagaatgtataccttgaatatatctgaaagggaaaaagatcaaaggaagttgtgttgtgaccagtacatgccagcttcagcaaagaagggtttttgttctttccccccaacagaagacatttttcttgcttctctgaatatactgaatttaggattagtttgtttaaaaaaaaatcggtgctcacataattagacactaagtgtcagctaactaacacaaccccaggcagtgtggatccaaggtcagtgtcactttccttgccccacagttttgaaagcagatggtgctaaagactctcaaagtaccaggtgctgtcaagcctggtgcagtctgggaagacaagcctcatcataggcctgtgagctgtaccctagccactgttaggaacagggcagggtcttggaatttatagtctgtgtttgattacttgtttaatttggtgtctcttgtgtttaattccacaatgaatgactttttaaaaaaagatttattatttatatgtatgtatactgtacctgtcttcagacacaccagtagagggtgtcagatgtcattatggatgattgtaagccaccatgtggttgctgggatttgaactcaggaccttcagaagaacagtcggtgctcttaacctcgctgagctatatctccagctcccaatgaatgacttaagtcttaaatagaaccaccatttaaaactgggtaaatgaagtgagacagagctcctctagggaaaaatttgaaattcagcgatagcttgggataatggtgataggtgaatttaaaagtgggctaccacattgggtcacacatgcttttaatcctgacacctgagaggcagaggcaagtggatctctgaatgtgaggccagcttggtctggtctacatagatagccagggttatggggagtggggggaggtgcggggagggggagaagtcacccttcctcttgatagttctactcaaccagcacttcccatgtgttcactagaatttttattccttagttctgtcaagattgtcccttatacatgcctaccctccattctatcacattgcccgtctctttgaacatcagagtaacatcctgccaggtcactggaagctcagacttctgttgaagcctcatccacaggttcggaggggcagatgtgattgagttggagacaagaactgttattatacaaattcatgggacatgacgccatttatcatcccacttaataagcattggattccaactgatccaatccaagaaaataaaaaccatgcccatttcccttctgatgggaagacatcaaatgtcacctttgtgttttgatccgttccttatgtgacagcttaacaagaaaccatcatgtgctctgtagaggaatagctagggggacatcagccaggagatatactggaagacacttttgatggcgactgagtgttctcagtcacgaccccccacaaagctcacttttcttcctcttttttcctccaattttcttcatctattcctattctctaacattactaagatgccatactattgaagaattttccagatgggctgtaggtaccatgaatggggctctgagttctaaatgttcagtaaataagcattgagtctcaagggggtgctgatatcctcaaagacatgaatatcatttgtgatgtctggaacattaaaggaacgatgtagcataaagaagccaataaaaaccagaagaaatctctactggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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