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Previous release (v1)
2024-06-29 20:19:44, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_053185 6652 bp mRNA linear ROD 17-JAN-2024
DEFINITION Mus musculus collagen, type IV, alpha 6 (Col4a6), mRNA.
ACCESSION NM_053185
VERSION NM_053185.3
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 6652)
AUTHORS Thomas,M.H., Gui,Y., Garcia,P., Karout,M., Gomez Ramos,B.,
Jaeger,C., Michelucci,A., Gaigneaux,A., Kollmus,H., Centeno,A.,
Schughart,K., Balling,R., Mittelbronn,M., Nadeau,J.H., Sauter,T.,
Williams,R.W., Sinkkonen,L. and Buttini,M.
TITLE Quantitative trait locus mapping identifies a locus linked to
striatal dopamine and points to collagen IV alpha-6 chain as a
novel regulator of striatal axonal branching in mice
JOURNAL Genes Brain Behav 20 (8), e12769 (2021)
PUBMED 34453370
REMARK GeneRIF: Quantitative trait locus mapping identifies a locus linked
to striatal dopamine and points to collagen IV alpha-6 chain as a
novel regulator of striatal axonal branching in mice.
REFERENCE 2 (bases 1 to 6652)
AUTHORS Tang,S., Yonezawa,T., Maeda,Y., Ono,M., Maeba,T., Miyoshi,T.,
Momota,R., Tomono,Y. and Oohashi,T.
TITLE Lack of collagen alpha6(IV) chain in mice does not cause
severe-to-profound hearing loss or cochlear malformation, a
distinct phenotype from nonsyndromic hearing loss with COL4A6
missense mutation
JOURNAL PLoS One 16 (4), e0249909 (2021)
PUBMED 33848312
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 6652)
AUTHORS Komori,T., Ono,M., Hara,E.S., Ueda,J., Nguyen,H.T.T., Nguyen,H.T.,
Yonezawa,T., Maeba,T., Kimura-Ono,A., Takarada,T., Momota,R.,
Maekawa,K., Kuboki,T. and Oohashi,T.
TITLE Type IV collagen alpha6 chain is a regulator of keratin 10 in
keratinization of oral mucosal epithelium
JOURNAL Sci Rep 8 (1), 2612 (2018)
PUBMED 29422532
REMARK GeneRIF: These findings indicate that alpha112:alpha556 (IV)
network, which is the only network that includes the alpha6(IV)
chain, is one regulator of KRT10 expression in keratinization of
oral mucosal epithelium.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 6652)
AUTHORS Naba,A., Clauser,K.R., Mani,D.R., Carr,S.A. and Hynes,R.O.
TITLE Quantitative proteomic profiling of the extracellular matrix of
pancreatic islets during the angiogenic switch and insulinoma
progression
JOURNAL Sci Rep 7, 40495 (2017)
PUBMED 28071719
REMARK Publication Status: Online-Only
REFERENCE 5 (bases 1 to 6652)
AUTHORS Murata,T., Katayama,K., Oohashi,T., Jahnukainen,T., Yonezawa,T.,
Sado,Y., Ishikawa,E., Nomura,S., Tryggvason,K. and Ito,M.
TITLE COL4A6 is dispensable for autosomal recessive Alport syndrome
JOURNAL Sci Rep 6, 29450 (2016)
PUBMED 27377778
REMARK GeneRIF: although alpha5 and alpha6 (IV) chains are induced in the
glomerular basement membrane in autosomal recessive Alport
syndrome, their induction does not seem to play a major
compensatory role
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 6652)
AUTHORS Shindo,T., Manabe,I., Fukushima,Y., Tobe,K., Aizawa,K.,
Miyamoto,S., Kawai-Kowase,K., Moriyama,N., Imai,Y., Kawakami,H.,
Nishimatsu,H., Ishikawa,T., Suzuki,T., Morita,H., Maemura,K.,
Sata,M., Hirata,Y., Komukai,M., Kagechika,H., Kadowaki,T.,
Kurabayashi,M. and Nagai,R.
TITLE Kruppel-like zinc-finger transcription factor KLF5/BTEB2 is a
target for angiotensin II signaling and an essential regulator of
cardiovascular remodeling
JOURNAL Nat Med 8 (8), 856-863 (2002)
PUBMED 12101409
REFERENCE 7 (bases 1 to 6652)
AUTHORS Nagai,N., Nakano,K., Sado,Y., Naito,I., Gunduz,M., Tsujigiwa,H.,
Nagatsuka,H., Ninomiya,Y. and Siar,C.H.
TITLE Localization of type IV collagen a 1 to a 6 chains in basement
membrane during mouse molar germ development
JOURNAL Int J Dev Biol 45 (7), 827-831 (2001)
PUBMED 11732842
REFERENCE 8 (bases 1 to 6652)
AUTHORS Bhatt,R.S., Tomoda,T., Fang,Y. and Hatten,M.E.
TITLE Discoidin domain receptor 1 functions in axon extension of
cerebellar granule neurons
JOURNAL Genes Dev 14 (17), 2216-2228 (2000)
PUBMED 10970885
REFERENCE 9 (bases 1 to 6652)
AUTHORS Saito,K., Naito,I., Seki,T., Oohashi,T., Kimura,E., Momota,R.,
Kishiro,Y., Sado,Y., Yoshioka,H. and Ninomiya,Y.
TITLE Differential expression of mouse alpha5(IV) and alpha6(IV) collagen
genes in epithelial basement membranes
JOURNAL J Biochem 128 (3), 427-434 (2000)
PUBMED 10965041
REFERENCE 10 (bases 1 to 6652)
AUTHORS Lu,W., Phillips,C.L., Killen,P.D., Hlaing,T., Harrison,W.R.,
Elder,F.F., Miner,J.H., Overbeek,P.A. and Meisler,M.H.
TITLE Insertional mutation of the collagen genes Col4a3 and Col4a4 in a
mouse model of Alport syndrome
JOURNAL Genomics 61 (2), 113-124 (1999)
PUBMED 10534397
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL713983.9 and AL691493.17.
On Jan 17, 2024 this sequence version replaced NM_053185.2.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AB041351.1, SRR17253014.4961779.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN01164138 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression,
longest protein
##RefSeq-Attributes-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-272 AL713983.9 108058-108329 c
273-324 AL713983.9 107811-107862 c
325-408 AL691493.17 166735-166818 c
409-543 AL691493.17 73407-73541 c
544-588 AL691493.17 71782-71826 c
589-705 AL691493.17 67132-67248 c
706-774 AL691493.17 64954-65022 c
775-810 AL691493.17 63329-63364 c
811-873 AL691493.17 60051-60113 c
874-909 AL691493.17 58685-58720 c
910-951 AL691493.17 58445-58486 c
952-1044 AL691493.17 57169-57261 c
1045-1098 AL691493.17 55777-55830 c
1099-1158 AL691493.17 47890-47949 c
1159-1203 AL691493.17 46786-46830 c
1204-1257 AL691493.17 46244-46297 c
1258-1327 AL691493.17 45463-45532 c
1328-1435 AL691493.17 44413-44520 c
1436-1585 AL691493.17 43104-43253 c
1586-1690 AL691493.17 41668-41772 c
1691-1851 AL691493.17 40281-40441 c
1852-2031 AL691493.17 39419-39598 c
2032-2215 AL691493.17 38543-38726 c
2216-2287 AL691493.17 33458-33529 c
2288-2395 AL691493.17 33096-33203 c
2396-2617 AL691493.17 31928-32149 c
2618-2779 AL691493.17 31389-31550 c
2780-2950 AL691493.17 29555-29725 c
2951-3094 AL691493.17 28680-28823 c
3095-3220 AL691493.17 27622-27747 c
3221-3402 AL691493.17 26998-27179 c
3403-3466 AL691493.17 22862-22925 c
3467-3541 AL691493.17 22149-22223 c
3542-3649 AL691493.17 21583-21690 c
3650-3757 AL691493.17 21382-21489 c
3758-3829 AL691493.17 18790-18861 c
3830-3955 AL691493.17 18400-18525 c
3956-4072 AL691493.17 14667-14783 c
4073-4234 AL691493.17 14201-14362 c
4235-4333 AL691493.17 13952-14050 c
4334-4480 AL691493.17 12002-12148 c
4481-4597 AL691493.17 11443-11559 c
4598-4789 AL691493.17 8892-9083 c
4790-5076 AL691493.17 7927-8213 c
5077-6652 AL691493.17 4736-6311 c
FEATURES Location/Qualifiers
source 1..6652
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="X"
/map="X 61.8 cM"
gene 1..6652
/gene="Col4a6"
/note="collagen, type IV, alpha 6"
/db_xref="GeneID:94216"
/db_xref="MGI:MGI:2152695"
exon 1..272
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
misc_feature 199..201
/gene="Col4a6"
/note="upstream in-frame stop codon"
CDS 262..5337
/gene="Col4a6"
/note="procollagen, type IV, alpha 6"
/codon_start=1
/product="collagen alpha-6(IV) chain precursor"
/protein_id="NP_444415.2"
/db_xref="CCDS:CCDS41153.1"
/db_xref="GeneID:94216"
/db_xref="MGI:MGI:2152695"
/translation="
MHPGLWLFLVSLCLTKELAESGQKMSYGKPCGSRDCHGVCTCFPEKGARGHPGPIGTQGPAGPEGFTGPTGLSGLKGERGSPGPLGPYGSKGDKGPIGVPGFVGISGIPGHPGQPGPRGPPGPDGCNGTQGAVGFPGPDGYPGILGPPGLPGHKGAKGEPVPFQGSITGIRGDPGLPGLDGIPGPSGSSGSPGDAGPIGPPGLQGPPGLPGLPGPEGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPPGFPGMSGPPGVPEFGSTGEKGEKGILGLPGPRGPMGSEGIQGHPGRQGKKGTSGFPGINGFPGIKGEKGDIGVRGPDSFTDADGAVISGYPGDPGVLGLPGLRGDEGVQGQRGPSGTPGLPSLTGLPGALGPQGFPGLKGDQGNSGRTTFGEAGLPGRVGLPGLPGLPGPSGPPGRTFETGHLSNIEPGFPGLQGEQGPKGHQGLKGVKGDSGFCACEGGAPNIGPHGEPGLPGIQGPIGLQGFKGTKGDPGSRGASGPAGTPGLFGPRGQTGLKGKKGEPTVSRGSKMSGDKGDPGPQGTPGLAGTPGKDGRPGLPGLPGIQGDGGSGFPGERGLPGLPGEKGHDGPIGPPGIGLPGPPGPRGLPGDKGVDGLPGQQGLRGAQGVTLPCIIPGSYGPSGFPGAPGFPGSKGARGLPGIPGKPGTHGSKGGPGSPGLMHLPGLPGFPGVRGEKGLPGFPGLPGKDGYPGKAGSPGLPGFKGAAGDIFGAENGASGEQGLQGLPGDKGFPGDSGLPGPKGLNGKPGMLGPKGERGNPGTSGPPGQPGPSGSTDPFGIKGTSGFPGAPGLPGISGHPGKKGQRGDIGQPGSTGKRGLPGIKGLPGPQGSPGFLGSPGLSGVTGLPGIEGQKGEKGSSGPVGFPGLPGLPGLPGADGLKGFSGSFGKVGQPGQTGTSGEKGDRGDPGPVGISSPRPPMLNLWFKGEKGSRGSAGSDGFPGPRGDKGEPGIPGLPGPPGATGQTNTIKGLNGRPGSPGSMGRRGLPGLKGSLGIAGFPGMPGKSGSQGLTGTSGLLGATGIPGLKGDQGQTLGISGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDPGFPGSPGLQGISGMNGDPGLPGSSGHLGSIGRPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPGASITGVPGPAGLPGPKGERGVPGIVIGDPGKQGSKGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQGFKGNQGLPGFSGLSGELGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEAMQVPPGPLGLPGIDGIPGLIGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGPPGFEGAPGNQGPIGQPGMPGHGVRVGYTLVKHSQSEQVPLCPTGMSRLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQIPQYISRCSVCEAPSQAIAVHSQDIIVPQCPLGWHSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERGQFREEPVSETLKTGQLHTRVSRCQVCMKTP"
sig_peptide 262..318
/gene="Col4a6"
/inference="COORDINATES: ab initio prediction:SignalP:4.0"
misc_feature 400..564
/gene="Col4a6"
/note="Collagen triple helix repeat (20 copies); Region:
Collagen; pfam01391"
/db_xref="CDD:460189"
misc_feature <484..>1269
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <1141..>2013
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <1630..>2472
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <2176..>2904
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <2551..>3399
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <3448..>4296
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature <4027..>4662
/gene="Col4a6"
/note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
Region: gly_rich_SclB; NF038329"
/db_xref="CDD:468478"
misc_feature 4663..4980
/gene="Col4a6"
/note="C-terminal tandem repeated domain in type 4
procollagen; Region: C4; pfam01413"
/db_xref="CDD:460201"
misc_feature 4987..5328
/gene="Col4a6"
/note="C-terminal tandem repeated domain in type 4
procollagen; Region: C4; pfam01413"
/db_xref="CDD:460201"
exon 273..324
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 325..408
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 409..543
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 544..588
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 589..705
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 706..774
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 775..810
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 811..873
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 874..909
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 910..951
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 952..1044
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1045..1098
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1099..1158
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1159..1203
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1204..1257
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1258..1327
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1328..1435
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1436..1585
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1586..1690
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1691..1851
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 1852..2031
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2032..2215
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2216..2287
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2288..2395
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2396..2617
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2618..2779
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2780..2950
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 2951..3094
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3095..3220
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3221..3402
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3403..3466
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3467..3541
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3542..3649
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3650..3757
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3758..3829
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3830..3955
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 3956..4072
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4073..4234
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4235..4333
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4334..4480
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4481..4597
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4598..4789
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 4790..5076
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
exon 5077..6652
/gene="Col4a6"
/inference="alignment:Splign:2.1.0"
ORIGIN
attccttcctccctgggctcatggaactatctcctgagtgctagaagttgtagcgggcaccactgcgtgtgttttcctttggggcactttttttttctagcggctgattttagtttcttccaaattaagccacttcgccccccttccccacactgtcctgaataaggaacaaactgccaagcatcaacggagcccagatgagcccgcgccgcggagcagcttagcagtctcctgggacccagctccggagcagccacaagcatgcaccctggattgtggctgttcctggtttccttatgcttgaccaaagaactggcagaatcgggacagaagatgtcctatggaaagccatgtgggagccgagattgccatggagtctgtacatgctttcctgagaaaggagcaagagggcaccctggaccaattggaactcaaggtccagccggtccggaagggtttactggtccaactggtttatcaggtttgaaaggagaaagaggctccccaggccctctgggaccatatggatcaaaaggagataagggtcccattggagttcctggctttgttggcatcagtggtattccgggccaccctggacagccaggtccaagaggtccacctggcccagatggctgtaatggaactcaaggagctgttggatttccaggccctgatggctaccctgggattttaggaccacctgggctgcctggtcacaaaggtgccaaaggagagcctgttccttttcaaggcagcattacaggaataaggggagatcctgggctgcctggactagatggaatccctggtccatcaggatcctccggctctcctggagatgcaggacccataggaccaccaggcttacaaggtcccccaggcctccccggacttcccggtcctgagggaaatatggggttaggtttccaaggagaaaaaggagtcaagggggatgttggcctccctggccctgcaggaccacctccatctactggggaactagaattcatgggattccccaaaggaaagaaaggttccaagggtgagccagggcctccaggtttcccaggaatgagtggccctccaggtgtcccggaatttggatctactggagaaaaaggagaaaaggggattcttggtttgccaggacctaggggtcccatgggttcagaaggaatacaaggccatccagggagacagggaaagaaggggacttcaggttttcctgggattaacgggttcccaggaattaagggtgaaaagggagacattggtgttcgaggcccagacagtttcactgatgcagatggcgctgtgatctcaggttatcctggagaccctggtgtgctgggccttccaggccttagaggagatgaaggcgtccaaggccaacgtggcccttctggaacccctggcctcccatcattaacaggtcttccaggtgccctagggcctcagggatttcctggcctgaaaggagaccaaggaaactcaggacgtaccacctttggagaagctggcctacctggcagggttggtttaccaggtttaccaggcctgccaggcccatcaggcccacctggtcgcacatttgagactggacatctgtccaacatagagcctgggttccctggtctccaaggagaacaaggtccaaaaggacatcaaggcctcaaaggagtaaaaggagactctggtttttgtgcttgtgaaggtggtgcccccaacattggaccacatggggaaccaggtctgcctgggatacaaggtcccattggtctacagggttttaaggggactaaaggagatccaggctcaaggggagcatctggtcctgcagggacgccagggctatttggacctagaggtcagactggcctcaaaggaaagaaaggagaaccaactgtcagtagaggatcaaaaatgtcaggggacaaaggtgaccctggtcctcagggtaccccaggtttggcaggaactccgggcaaggatggaagaccaggtttaccaggcctcccaggcattcagggagatggtgggtctggcttcccaggtgaaagagggttaccaggacttcctggtgaaaaaggccatgatggtccaattggaccaccaggaattgggctgccaggacctcctgggccccgtggacttcctggagataaaggagtagatgggttaccagggcaacaaggcctccgtggagctcaaggagtcaccttgccttgtatcattcctgggtcatatggtccatcaggatttcctggagctcctggattcccaggctctaagggagctcggggcctccctggaattccaggcaagcctggcactcacggaagcaaaggagggcctgggagtccagggttaatgcatctcccaggattgccagggtttcctggagttcgtggggagaagggattacctgggtttcctgggcttcctggaaaagatggctaccctgggaaagctggcagtccagggttaccaggtttcaagggagctgctggtgacatatttggtgctgaaaatggtgcttcgggggagcaaggcctacagggattgccaggggacaaaggatttcctggagactctggccttccaggacccaagggtttgaatgggaaacctggtatgctaggccccaagggtgagcggggcaaccctggaacatcaggaccaccaggacagccaggaccctcagggtctactgacccatttggcatcaagggcacatctggattcccaggagcaccaggccttccaggcatctcagggcaccctggaaagaaaggtcaaagaggagacataggtcagcctggatcaactggaaaaagaggtctacctgggataaaaggccttcctggtcctcaagggtcacctggcttcctggggagcccaggtttgtcaggcgtcactgggttgccgggcatcgaaggccaaaagggtgaaaaggggtcctctggaccagtaggatttcctgggttacctggtcttcctggtcttcctggagctgatggattaaagggattttctgggtcatttggaaaggtgggacaacctggacagactggtacttccggagaaaaaggagacagaggggatccagggccagttggcatatctagtccaagacctccaatgctaaacctttggttcaaaggagaaaaaggctctcgaggttctgctggatcggatggatttcctgggcccagaggtgacaaaggagagcctggcatcccagggttaccaggtccacctggagctactggacaaaccaataccatcaaagggctcaatgggaggccaggttctcctggatctatgggaagaaggggattacctggcctgaaggggtctcttgggattgcaggtttcccaggaatgccagggaaaagcggttcacaggggctcactgggacttctggcctcctgggagcaactggtatcccaggtttaaaaggagatcaaggccaaacacttggcatttctggaagcccaggacccaagggacagcctggagaattaggttttaaaggtgtcaaaggaaaagatggactagttggtgatagaggttacccaggaaacaaaggtgatggtggaaaagttggaattactggagatcctggcttccctggctccccaggacttcaagggatttcaggtatgaatggagacccaggcctcccaggttcctctggccatctggggtcaattggccgccctggaccctcaggcttaataggacctaaaggattccctggagctcctggtttacatggactgaatggacttccaggcaccaagggcacccatggcactccaggagccagtatcactggtgttcctgggccggctggcctgcctggtcccaaaggggaaaggggagtgccaggaattgtcatcggagatccagggaaacaaggttcaaagggacaaaaaggtgaccaaggttccccaggtcttcaaggtcctgctggtacccctggagccccaggcatctccttgccctcagtcatagcaggacagcctggtgaccctgggcggccaggcctagatggagaacgaggccgcccaggccctccaggtcctccaggtccccctgggccatcctcagatcaaggcgatcctggagactctggcttccctgggattccaggccttcaagggttcaagggaaaccaaggacttccaggtttctctggcctctctggagagctagggctaaagggcatgagaggggaacctggcctcatggggactcctggcaagatcgggcaaccaggagacccaggatttcctgggatgaaggggaaggcggggccaagaggcttttccggcccacagggagctccaggacacacaccaattgctgaagctatgcaggttcctccaggacctttgggtctgccaggcattgatggtatcccaggcctcataggagaccctgggtctcaaggctctgtgggtctgcaaggttccaaaggcctacctggcatccctggtaaggatggccccagtgggcttccaggcccatctggaatccttggtgatcctggtctccctggactacaaggacctccaggatttgaaggagctccgggaaatcagggccccattgggcagcctgggatgcctgggcacggtgtgagagtgggctacacactagtaaaacacagtcagtcagaacaggtgccactatgccccactgggatgagccggctctgggtgggttacagcttgctcttcgtggaggggcaggagaaagcccataaccaggatctgggatttgctggctcctgcctgccccgattcagcaccatgcccttcatatactgcaacatcaatgaagtgtgccactatgccagacgcaatgataaatcttactggctctccactactgcccccattcccatgatgcctgtgggccagacccagattccccagtatatcagccgctgctctgtatgtgaggcaccctcacaagccattgctgtacacagtcaggacatcattgtcccacagtgccctctgggctggcacagcctctggatcggatactccttcctcatgcacactgctgctggggctgagggtggaggccagtccctagtctcccctggctcgtgtcttgaggacttccgggccactcctttcattgagtgcagcggcgcccgtggtacatgccactactttgccaacaagtacagtttctggctgacaacggtggaggagagagggcagtttcgggaagagcccgtgtctgagacgctgaaaactgggcagcttcacaccagggtgagccgctgccaggtgtgtatgaaaaccccgtagggtactgcccgtcatccagcccacctcacaacactcacctcaacagtctgagaaaggaaggcctgagcccatctgcctgtcaagttgtacatcaatgcctcgtttggactggactactggacaatggtcatcccaaccctcagacccaacagatgagcccactgtgctaggatttgctttcctgtttccatccatctggtgctaacattccatttagatatgtgtgtgattactcatggctaccttaggaaggtgtgctaagctgtcacttgcgaagatggctagagctctcttcactgccttaagctggaagttctttataacagcgaagttatgtctttatgacaagacgtcaccacacatcatttgagtcaaactaaagctcaggatttccaccctaaaaatacgtttctggctgaatatgatagataattcaagtctgcctagggctagccctccctactgaaggcagcctattatatttagacaggcagtagtgttggaatgagaaaccagcctatagccagaactgagctgtgattccttgcagagttttgttaagcccatgccccatcttgagtaggaaaggctgaaaggccagtatttggtcctagacaaatcactgtcccctggtcccacatctagagatataagacaagttggcccagtccaaagtggaaccaagaattcgataagtgtgatcaagcttgtcacagaaagacatgagaatcacttctccttcttcttggcctagggcagaaggagaaatacatatagaggtagcagttttgcttctgagtccaggaaccaaaaggtaaagctcatgtccccattcctcagaagtccctagttattccaaatgccacccagatttatgcagggtgacaaactgaagctgcagtgtgttggctccttgcatgctgaggctcttagaggtgttctgataaaatggccatccaaacaccctcccacgggtagccttttaaactatttgacagggttttttttttttaatttcataaaaatctagcacacaccaatgttagcagacccgaggtacattctgagctggccatgaagtatactgccttctgtttgaagcagttcattttaattaccagttgcggagaacacaatcagttccactgacatgaagcgctcccttgcaggtgattggcttccttgagtactatgtaaaccgtgcccacgcaggcaaagcataacaagtacattctgagctcttgttatcacctcctagataagtaacaaatggtgtcagctttgtacatagcaaataaaattaatgaaatacgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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