2024-09-28 09:30:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_053153 1239 bp mRNA linear ROD 18-FEB-2022 DEFINITION Mus musculus killer cell lectin-like receptor, subfamily A, member 18 (Klra18), mRNA. ACCESSION NM_053153 VERSION NM_053153.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1239) AUTHORS Mahmoud AB, Tu MM, Wight A, Zein HS, Rahim MM, Lee SH, Sekhon HS, Brown EG and Makrigiannis AP. TITLE Influenza Virus Targets Class I MHC-Educated NK Cells for Immunoevasion JOURNAL PLoS Pathog 12 (2), e1005446 (2016) PUBMED 26928844 REMARK GeneRIF: Data suggest Ly49:Ly49r interactions play critical role in influenza virus A host/pathogen interactions including immune evasion; knockout mice with natural killer cells lacking Ly49 survive influenza A infection; Ly49r restores susceptibility. Erratum:[PLoS Pathog. 2016 Nov 4;12 (11):e1006021. PMID: 27814389] Publication Status: Online-Only REFERENCE 2 (bases 1 to 1239) AUTHORS Schenkel AR, Kingry LC and Slayden RA. TITLE The ly49 gene family. A brief guide to the nomenclature, genetics, and role in intracellular infection JOURNAL Front Immunol 4, 90 (2013) PUBMED 23596445 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1239) AUTHORS Desrosiers MP, Kielczewska A, Loredo-Osti JC, Adam SG, Makrigiannis AP, Lemieux S, Pham T, Lodoen MB, Morgan K, Lanier LL and Vidal SM. TITLE Epistasis between mouse Klra and major histocompatibility complex class I loci is associated with a new mechanism of natural killer cell-mediated innate resistance to cytomegalovirus infection JOURNAL Nat Genet 37 (6), 593-599 (2005) PUBMED 15895081 REFERENCE 4 (bases 1 to 1239) AUTHORS Makrigiannis AP, Pau AT, Saleh A, Winkler-Pickett R, Ortaldo JR and Anderson SK. TITLE Class I MHC-binding characteristics of the 129/J Ly49 repertoire JOURNAL J Immunol 166 (8), 5034-5043 (2001) PUBMED 11290784 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF288377.1. On Apr 6, 2007 this sequence version replaced NM_053153.1. ##Evidence-Data-START## Transcript exon combination :: AF288377.1 [ECO:0000332] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1239 AF288377.1 1-1239 FEATURES Location/Qualifiers source 1..1239 /organism="Mus musculus" /mol_type="mRNA" /strain="129/J" /db_xref="taxon:10090" /chromosome="6" /map="6" gene 1..1239 /gene="Klra18" /gene_synonym="Ly49r" /note="killer cell lectin-like receptor, subfamily A, member 18" /db_xref="GeneID:93970" /db_xref="MGI:MGI:2136935" misc_feature 82..84 /gene="Klra18" /gene_synonym="Ly49r" /note="upstream in-frame stop codon" CDS 145..936 /gene="Klra18" /gene_synonym="Ly49r" /codon_start=1 /product="killer cell lectin-like receptor, subfamily A, member 18" /protein_id="NP_444383.1" /db_xref="GeneID:93970" /db_xref="MGI:MGI:2136935" /translation="
MTEQKDTFSAVRFHKSSGLQNEMRLKETRKPRKAGLRVCSVPWQFIVIALGILISLRLVIVAVLMTNIFQYGQQKHELQEFLKHHNNCSIMQSDINLKDELLKNKSIECNLLESINRDQNRLYNKTKTVLDSLQHTGRGVKVYWFCYGMKCYYFIMDRKPWSRCKQSCQNSSLTLLKIDNEDELKFLQLVVPSDSCWIGLSYDNKKKDWAWIDNRPSKLALNTTKYNIRDGGCMFLSKTRLDNNYCDQSFICICGKRLDKFPH"
misc_feature 262..606 /gene="Klra18" /gene_synonym="Ly49r" /note="Ly49-like protein, N-terminal region; Region: Ly49; pfam08391" /db_xref="CDD:462461" misc_feature 571..912 /gene="Klra18" /gene_synonym="Ly49r" /note="C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs); Region: CLECT_NK_receptors_like; cd03593" /db_xref="CDD:153063" misc_feature order(727..729,808..810,862..864,868..873) /gene="Klra18" /gene_synonym="Ly49r" /note="ligand binding surface [chemical binding]; other site" /db_xref="CDD:153063" ORIGIN
gcctctaaggggatacagaccaggaaaggcccacattacgccaacagggacatccattccttctacccacctcacttcaggtagagtcacagaaatcactcaaggacatattttaaaagagaacatactctacatactcccaagatgactgaacagaaagacactttctcagctgtgagattccataagtcttcagggttgcagaacgagatgaggctcaaggagacacggaagcctcgaaaagctggcctcagagtgtgttcagttccctggcagttcattgtgatagctctcggaatcctcatttcccttcgactggtaattgttgcagtgcttatgacaaacatttttcagtatggtcaacaaaaacatgaactgcaggaatttctaaaacaccacaataactgcagcatcatgcaaagtgacatcaacttgaaggatgaactgctgaaaaataagtctatagagtgtaatcttctggaatccatcaacagggatcagaacagattgtataataaaaccaagactgttttagattccttacagcacacaggcagaggtgttaaagtatactggttctgttatggtatgaaatgttattatttcatcatggacagaaaaccatggagtagatgtaaacagagctgccagaattccagcttaacccttctgaagatagacaatgaggatgaactgaagttccttcagctcgtggtaccttcagacagttgctggattgggttgtcatatgataataagaaaaaagattgggcatggattgacaatcgcccatctaaacttgccttgaacacaacgaaatacaatataagagatggaggatgtatgttcttatctaaaactagactagacaataattactgtgatcaatcattcatctgtatttgtgggaagagattggacaaattccctcattgactctccagtgagtcttaaaagtaaaaaaaaatgaaattttctgactctcatttgtttcctgtaataattcatgactccttagaaacaagtgttttgaccattggacttagtctgcagtgcaaagagagagacactctggaagattttgggaatgttctctgaaacatgacatgaaagagcagaggacatcttccttccctgtggagactggacagatcttctctggtcccgcaaaacttgaatgaatctgatttatttgtttgcataaactccaatagaattaaataaaaaaaccttaataac
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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