2024-07-01 23:45:41, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_028797 740 bp mRNA linear ROD 05-FEB-2024 DEFINITION Mus musculus gametocyte specific factor 1 (Gtsf1), mRNA. ACCESSION NM_028797 XM_895110 XM_917380 VERSION NM_028797.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 740) AUTHORS Arif,A., Bailey,S., Izumi,N., Anzelon,T.A., Ozata,D.M., Andersson,C., Gainetdinov,I., MacRae,I.J., Tomari,Y. and Zamore,P.D. TITLE GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins JOURNAL Nature 608 (7923), 618-625 (2022) PUBMED 35772669 REMARK GeneRIF: GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins. REFERENCE 2 (bases 1 to 740) AUTHORS He,Y., Chen,Q., Dai,J., Cui,Y., Zhang,C., Wen,X., Li,J., Xiao,Y., Peng,X., Liu,M., Shen,B., Sha,J., Hu,Z., Li,J. and Shu,W. TITLE Single-cell RNA-Seq reveals a highly coordinated transcriptional program in mouse germ cells during primordial follicle formation JOURNAL Aging Cell 20 (7), e13424 (2021) PUBMED 34174788 REFERENCE 3 (bases 1 to 740) AUTHORS Ipsaro,J.J., O'Brien,P.A., Bhattacharya,S., Palmer,A.G. 3rd and Joshua-Tor,L. TITLE Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons JOURNAL Cell Rep 34 (13), 108914 (2021) PUBMED 33789107 REMARK GeneRIF: Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. REFERENCE 4 (bases 1 to 740) AUTHORS Yoshimura,T., Watanabe,T., Kuramochi-Miyagawa,S., Takemoto,N., Shiromoto,Y., Kudo,A., Kanai-Azuma,M., Tashiro,F., Miyazaki,S., Katanaya,A., Chuma,S. and Miyazaki,J.I. TITLE Mouse GTSF1 is an essential factor for secondary piRNA biogenesis JOURNAL EMBO Rep 19 (4) (2018) PUBMED 29437694 REMARK GeneRIF: Our findings indicate that GTSF1 is a crucial factor for the slicing of target RNAs by PIWI-piRNAs and thus affects secondary piRNA biogenesis in prospermatogonia. REFERENCE 5 (bases 1 to 740) AUTHORS Yoshimura,T., Toyoda,S., Kuramochi-Miyagawa,S., Miyazaki,T., Miyazaki,S., Tashiro,F., Yamato,E., Nakano,T. and Miyazaki,J. TITLE Gtsf1/Cue110, a gene encoding a protein with two copies of a CHHC Zn-finger motif, is involved in spermatogenesis and retrotransposon suppression in murine testes JOURNAL Dev Biol 335 (1), 216-227 (2009) PUBMED 19735653 REMARK GeneRIF: Results indicate that Gtsf1/Cue110 is required for spermatogenesis and involved in retrotransposon suppression in male germ cells. REFERENCE 6 (bases 1 to 740) AUTHORS Krotz,S.P., Ballow,D.J., Choi,Y. and Rajkovic,A. TITLE Expression and localization of the novel and highly conserved gametocyte-specific factor 1 during oogenesis and spermatogenesis JOURNAL Fertil Steril 91 (5 Suppl), 2020-2024 (2009) PUBMED 18706558 REMARK GeneRIF: Expression pattern of Gtsf1 and its high conservation suggests that it may play an important role in germ cell development. REFERENCE 7 (bases 1 to 740) AUTHORS Yoshimura,T., Miyazaki,T., Toyoda,S., Miyazaki,S., Tashiro,F., Yamato,E. and Miyazaki,J. TITLE Gene expression pattern of Cue110: a member of the uncharacterized UPF0224 gene family preferentially expressed in germ cells JOURNAL Gene Expr Patterns 8 (1), 27-35 (2007) PUBMED 17919994 REMARK GeneRIF: the Cue110 gene is expressed predominantly in male germ cells at stages from the pachytene spermatocytes to round spermatids COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BU945975.1, AK005675.1 and CO812705.1. On or before Nov 1, 2008 this sequence version replaced XM_917380.3, XM_895110.3. ##Evidence-Data-START## Transcript exon combination :: BU939747.1, DV661953.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-23 BU945975.1 4-26 24-718 AK005675.1 2-696 719-740 CO812705.1 737-758 FEATURES Location/Qualifiers source 1..740 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="15" /map="15 58.93 cM" gene 1..740 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /note="gametocyte specific factor 1" /db_xref="GeneID:74174" /db_xref="MGI:MGI:1921424" exon 1..72 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" misc_feature 69..71 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /note="upstream in-frame stop codon" exon 73..117 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" CDS 102..605 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /codon_start=1 /product="gametocyte-specific factor 1" /protein_id="NP_083073.1" /db_xref="CCDS:CCDS49744.1" /db_xref="GeneID:74174" /db_xref="MGI:MGI:1921424" /translation="
MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTASFCGNNSPANNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ"
misc_feature 123..125 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q8WW33; propagated from UniProtKB/Swiss-Prot (Q9DAN6.1); phosphorylation site" misc_feature 141..215 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /note="U11-48K-like CHHC zinc finger; Region: zf-U11-48K; pfam05253" /db_xref="CDD:461603" misc_feature 243..314 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /note="U11-48K-like CHHC zinc finger; Region: zf-U11-48K; pfam05253" /db_xref="CDD:461603" exon 118..218 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 219..345 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 346..429 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 430..493 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 494..588 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 589..622 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" exon 623..723 /gene="Gtsf1" /gene_synonym="1700006H03Rik; Cue110" /inference="alignment:Splign:2.1.0" ORIGIN
aggccggaagtgggcgttgccggggcctggctgtgaggcgaagtcggcggtggggagagcttctggactgagcacttgaacaggactcctttgccatcagcatggaagacacttacatcgactccctggaccctgaaaagttattacagtgcccctatgataaaaatcaccagatcagggcctgcaggtttccttatcatcttatcaagtgcagaaagaatcatcctgatgtcgcaaacaaattggctacttgtcccttcaatgctcggcatcaggttccccgggctgagatcagtcatcacatctcgagctgtgatgacaagagctgtattgagcaggatgtggtcaaccaaaccaggaaccttggacaagagactctggctgagagcacatggcagtgccctccttgtgatgaagactgggataaagatttgtgggaacagactagcaccccatttgtctggggcacagccagtttctgtggcaacaacagtcctgcaaataacatagttatggaacataagagtaaccttgcttcaggcatgcgagttcccaagtctctgccctatgttttgccatggaaaaacaatggaaatgcacagtaactgaacatctttttcaaatgccagactgtggaagactcttgcttattcctgctaccaagggttcttcttttttctctttatctaattatagaacagtaaactgtctgtgactttcaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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