2024-09-28 09:28:43, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_026632 655 bp mRNA linear ROD 01-JUN-2024 DEFINITION Mus musculus replication protein A3 (Rpa3), mRNA. ACCESSION NM_026632 VERSION NM_026632.4 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 655) AUTHORS Bedogni,F. and Hevner,R.F. TITLE Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development JOURNAL Front Mol Neurosci 14, 686034 (2021) PUBMED 34321999 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 655) AUTHORS McJunkin,K., Mazurek,A., Premsrirut,P.K., Zuber,J., Dow,L.E., Simon,J., Stillman,B. and Lowe,S.W. TITLE Reversible suppression of an essential gene in adult mice using transgenic RNA interference JOURNAL Proc Natl Acad Sci U S A 108 (17), 7113-7118 (2011) PUBMED 21482754 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY057686.1, AK009916.1 and BU757427.1. On Nov 15, 2008 this sequence version replaced NM_026632.3. ##Evidence-Data-START## Transcript exon combination :: CK625053.1, BQ746890.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-31 BY057686.1 2-32 32-635 AK009916.1 4-607 636-655 BU757427.1 1-20 c FEATURES Location/Qualifiers source 1..655 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 3.53 cM" gene 1..655 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /note="replication protein A3" /db_xref="GeneID:68240" /db_xref="MGI:MGI:1915490" exon 1..142 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /inference="alignment:Splign:2.1.0" CDS 44..409 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /note="RP-A p14; RF-A protein 3; replication factor A protein 3" /codon_start=1 /product="replication protein A 14 kDa subunit" /protein_id="NP_080908.1" /db_xref="CCDS:CCDS19909.1" /db_xref="GeneID:68240" /db_xref="MGI:MGI:1915490" /translation="
MEDIMQLPKARVNASMLPQYIDRPVCFVGKLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGKVTAKATVLCASYTLFKEDTNRFDLELYNEAVKIINELPQFFPVGLPQHE"
misc_feature 56..382 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /note="Replication factor A protein 3; Region: Rep_fac-A_3; pfam08661" /db_xref="CDD:462551" exon 143..217 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /inference="alignment:Splign:2.1.0" exon 218..326 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /inference="alignment:Splign:2.1.0" exon 327..638 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /inference="alignment:Splign:2.1.0" regulatory 620..625 /regulatory_class="polyA_signal_sequence" /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /note="hexamer: AATAAA" polyA_site 638 /gene="Rpa3" /gene_synonym="14kDa; C330026P08Rik" /note="major polyA site" ORIGIN
attttctgctttcctgcgggttgcgagtgttggcggcagaatcatggaggacataatgcagctccccaaagcgcgcgtcaacgccagcatgttaccacagtatatcgaccggcccgtgtgcttcgtggggaagctggaaaagattcatcccactggaaaaatgtttattctttcagatggagaaggaaaaaatggaaccattgaattgatggagccacttgacgaggaaatctctgggattgtagaagtagttggaaaagtcacagccaaggcgaccgtgctctgtgcatcttataccctgtttaaggaagatactaatcgctttgatcttgaactttacaatgaagctgtgaaaattatcaatgagcttcctcagtttttccctgtagggcttccacaacatgaatgagcttcttcagtttcttaagattgccaggaagctacactgaaggctattaaggaagactcctgcagtttaatggagcgactcctataatttctaatatttaatttgttcttttatatatatatatttttttgtaaatctattatgacagtttacaactaagcctttttataaactttttttaaaagtgatacttcaatatatagtctgaataataaaaatcaaaatatgaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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