2024-06-29 20:50:36, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_011068 2291 bp mRNA linear ROD 02-APR-2024 DEFINITION Mus musculus peroxisomal biogenesis factor 11 alpha (Pex11a), transcript variant 1, mRNA. ACCESSION NM_011068 VERSION NM_011068.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2291) AUTHORS Weng,H., Ji,X., Endo,K. and Iwai,N. TITLE Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions JOURNAL Hypertension 64 (5), 1054-1060 (2014) PUBMED 25113963 REMARK GeneRIF: Pex11a deficiency is associated with a reduced abundance of functional peroxisomes and aggravated renal interstitial lesions. REFERENCE 2 (bases 1 to 2291) AUTHORS Weng,H., Ji,X., Naito,Y., Endo,K., Ma,X., Takahashi,R., Shen,C., Hirokawa,G., Fukushima,Y. and Iwai,N. TITLE Pex11alpha deficiency impairs peroxisome elongation and division and contributes to nonalcoholic fatty liver in mice JOURNAL Am J Physiol Endocrinol Metab 304 (2), E187-E196 (2013) PUBMED 23169785 REMARK GeneRIF: Pex11alpha deficiency impairs peroxisome elongation and abundance and peroxisomal fatty acid oxidation, which contributes to increased lipid accumulation in the liver. REFERENCE 3 (bases 1 to 2291) AUTHORS Wu,Y. and Smas,C.M. TITLE Wdnm1-like, a new adipokine with a role in MMP-2 activation JOURNAL Am J Physiol Endocrinol Metab 295 (1), E205-E215 (2008) PUBMED 18492766 REFERENCE 4 (bases 1 to 2291) AUTHORS Li,X., Baumgart,E., Dong,G.X., Morrell,J.C., Jimenez-Sanchez,G., Valle,D., Smith,K.D. and Gould,S.J. TITLE PEX11alpha is required for peroxisome proliferation in response to 4-phenylbutyrate but is dispensable for peroxisome proliferator-activated receptor alpha-mediated peroxisome proliferation JOURNAL Mol Cell Biol 22 (23), 8226-8240 (2002) PUBMED 12417726 REMARK GeneRIF: required for peroxisome proliferation in response to 4-phenylbutyrate but dispensable for peroxisome proliferator-activated receptor alpha-mediated peroxisome proliferation REFERENCE 5 (bases 1 to 2291) AUTHORS Schrader,M., Reuber,B.E., Morrell,J.C., Jimenez-Sanchez,G., Obie,C., Stroh,T.A., Valle,D., Schroer,T.A. and Gould,S.J. TITLE Expression of PEX11beta mediates peroxisome proliferation in the absence of extracellular stimuli JOURNAL J Biol Chem 273 (45), 29607-29614 (1998) PUBMED 9792670 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK076776.1 and AK149387.1. On Jan 26, 2018 this sequence version replaced NM_011068.1. Transcript Variant: This variant (1) represents the protein-coding transcript. ##Evidence-Data-START## Transcript exon combination :: AK149387.1, AF093669.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-109 AK076776.1 1-109 110-892 AK149387.1 2-784 893-2291 AK149387.1 786-2184 FEATURES Location/Qualifiers source 1..2291 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="7" /map="7 45.12 cM" gene 1..2291 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="peroxisomal biogenesis factor 11 alpha" /db_xref="GeneID:18631" /db_xref="MGI:MGI:1338788" exon 1..222 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="alignment:Splign:2.1.0" CDS 167..907 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="PEX11-alpha; peroxin-11A; protein PEX11 homolog alpha; peroxisomal biogenesis factor 11a" /codon_start=1 /product="peroxisomal membrane protein 11A" /protein_id="NP_035198.1" /db_xref="CCDS:CCDS21386.1" /db_xref="GeneID:18631" /db_xref="MGI:MGI:1338788" /translation="
MDAFIRVANQSQGRDRLFRATQHACMLLRYLLESKADKEAVVLKLKRLETSVSTGRKWFRLGNVFHAIQATEQSIQAADLAPRLCLTLANLNRVVYYICDTVLWAKSVGLTSGVNREKWQRWAARHYYYFLLLSLVRDLYEILLQMGQVARDRAKREKSSRDPPKYSVANEETEWLQSFLLLLFQSLKRHPPLLLDTVKNFCDILIPLNQLGIYKSNLGVVGLGGLISSLAGLLTVVYPQLKLKAR"
misc_feature 167..877 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="Peroxisomal biogenesis factor 11 (PEX11); Region: PEX11; pfam05648" /db_xref="CDD:398979" misc_feature 446..508 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="propagated from UniProtKB/Swiss-Prot (Q9Z211.1); transmembrane region" misc_feature 818..880 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="propagated from UniProtKB/Swiss-Prot (Q9Z211.1); Region: Required for homodimerization, interaction with PEX11G, and peroxisomal localization. /evidence=ECO:0000250|UniProtKB:O75192" misc_feature 818..880 /gene="Pex11a" /gene_synonym="PEX11alpha" /note="propagated from UniProtKB/Swiss-Prot (Q9Z211.1); transmembrane region" exon 223..338 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="alignment:Splign:2.1.0" exon 339..2291 /gene="Pex11a" /gene_synonym="PEX11alpha" /inference="alignment:Splign:2.1.0" ORIGIN
gaactccaaaagccgcgtttccgaaggtgtgcccacccccgtgtgggcggagagacgaagtcccacccacctggcaactaatctgttcccgctgtcccccgggaccggcgacgtcccaggggacccacgagggagcgggcgcaacgcgtggctgtgggtgggagccatggacgccttcatccgagtcgccaaccaaagccagggccgggaccgacttttcagagccactcagcacgcatgcatgttgcttagatatttgttagagtctaaagctgacaaagaggccgtggtactgaagctcaagaggctggagaccagtgtgagcactggccgtaaatggttcagactgggcaacgtgttccatgccatccaggcaactgagcagagcatccaagccgctgacctcgcgccccgcttatgcctgacattagccaacctcaaccgcgtggtttattacatctgtgacactgtcctctgggcgaagagtgtgggtcttacctctggagtcaacagagagaaatggcaaaggtgggcggctcgccattactactacttcctcttgctgagcctggtccgggatctgtatgagatcttgctgcagatgggacaagttgcacgtgacagagcaaagagagagaaatcctctcgggaccctcctaagtacagcgtggctaatgaagagactgaatggctccagtccttcctcctcctcctattccagtctctaaagcgacatcctcccttgctcctggacaccgtgaagaacttctgtgacatcctgatccctctgaaccagcttgggatctacaagtccaatctcggcgtggtaggacttggaggtctcatatcctctttggctggtctcctcacggtagtgtatcctcagctgaaactgaaggcccgctagggtgtttggaggctttaaggctagcagttcagtggaacaaacatttggttttgtcccaatgtttactgtgcttaatttaaaaaaaaaaaaaaaatcatgtgagcaccttaccatcctatgagcagaggtaggaccagcagtggcgcatgctacagtaacttcatttctgttcaggtaacattactgagcatcttttatgtacatagtaagagcctagtgttgctggacaaataaagatgaaaaggagagaaaccatgaaagacccaaagaaactagaattacagatcaggttgcacaggtccctgattccacacaagcacaccagggctgaagcacagcactcccagctctgcttaagttttcccttttctcccatctgttattatcccccactcccacgggtgtcaggagtgagatggaggggagctgggctcagcgcctgttaacctgctggtcccggtcattgctgcagtcgtgtcctgaccatgtccagtagcctcagaagaacatcagtgcctctggggcggaggctgtgtccacaggtagaaggctctcggtaatgctaggagcaagcaagagccacagaagggaccagaggtgaaagcaggtgggaggtcaccgcggcctgttatgtcatccgtcacagataaggactatgacagtacaaaacaaagctgatagcacagattcattgggagactttccaggatgatccgcgtgatctcgttaccttcagcggtcttcccgggctcagagcccttagccccttaacatgcccccgagtcctggagcttcagttgatggtttctgtcccagtctatgaaatgcaaagcaatctagactcacccaggttggtttgatttagctacataacagtttatgcaattccacagtaatttttatcaaaataagagaattaaattttttctgtctatagatgtaggaacgtcagttttctgtgacaaatctggttttctcaggacaactgagagggacaggaaagagcaatagggccagtggaggggtcgtggggacaccgggtcagtgcatttgcccgtgttcacacttcacggttcagtcttcctgtcttgagtttggttggtttaggtgtgtggtgtgggagacactggccagcaggcgggtcatgtctactaagtggaaatgagaactatgcactaagcaattgtttcccataaatgtgaaggtgattcttgaaaagtggactcaggcccttggcattctctacttttaaaatgataatgtgctttgagaagactttgggggcgggggttgagattaaagtggctaaaacaagacaaataccagcaaatgcctatttgcactgtaactttaattatgtctaataaatttctagataaaattg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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