2024-09-28 09:24:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001384090 417 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus cystatin A family member 2 (Csta2), transcript variant 1, mRNA. ACCESSION NM_001384090 XM_006522699 VERSION NM_001384090.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 417) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT033776.8. On May 28, 2020 this sequence version replaced XM_006522699.3. Transcript Variant: Variants 1 and 2 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: BY392927.1, SRR7652917.174039.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164135 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on manual assertion, conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-114 CT033776.8 32979-33092 115-216 CT033776.8 35522-35623 217-417 CT033776.8 37224-37424 FEATURES Location/Qualifiers source 1..417 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="16" /map="16 25.44 cM" gene 1..417 /gene="Csta2" /gene_synonym="2010005H15Rik" /note="cystatin A family member 2" /db_xref="GeneID:76770" /db_xref="MGI:MGI:1924020" exon 1..114 /gene="Csta2" /gene_synonym="2010005H15Rik" /inference="alignment:Splign:2.1.0" misc_feature 13..15 /gene="Csta2" /gene_synonym="2010005H15Rik" /note="upstream in-frame stop codon" CDS 49..342 /gene="Csta2" /gene_synonym="2010005H15Rik" /codon_start=1 /product="Cystatin-A-like" /protein_id="NP_001371019.1" /db_xref="GeneID:76770" /db_xref="MGI:MGI:1924020" /translation="
MMPGGLSRARSATPEIQEIANKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVFTGISGENVLELSGYQTNKTRKDELSYF"
misc_feature 58..318 /gene="Csta2" /gene_synonym="2010005H15Rik" /note="Cystatin domain; Region: Cystatin; pfam00031" /db_xref="CDD:425431" misc_feature order(184..192,196..198) /gene="Csta2" /gene_synonym="2010005H15Rik" /note="putative proteinase inhibition site [active]" /db_xref="CDD:238002" exon 115..216 /gene="Csta2" /gene_synonym="2010005H15Rik" /inference="alignment:Splign:2.1.0" exon 217..417 /gene="Csta2" /gene_synonym="2010005H15Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gatcatttcttctaagtgtcctatcgagcaaagaagcaactcatcagaatgatgcctggaggcttgtcacgggccagatctgccacaccagaaatccaggagattgctaataaggtcaagtcactgcttgaagagaaaaccaatgagaaatatgaagtgttcaaagctgttgagtataaatctcaagtcgtcgctggacaaaattacttcattaagatggatgttggtggtggttgtttcctccacataaaagtcttcacagggatttctggagaaaatgtcttggaacttagtggttaccagactaacaaaaccaggaaagatgagctgtcctacttctaagcagcaaattctaaagtgtcctgactcttctccttgtaaacagatttggccatcaataaagaatcaatcttgaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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