LOCUS       NM_001356396            1075 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus claudin 34B4 (Cldn34b4), transcript variant 2, mRNA.
ACCESSION   NM_001356396 XM_006528214
VERSION     NM_001356396.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672017.10 and BC147626.1.
            
            On Oct 4, 2017 this sequence version replaced XM_006528214.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC147626.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AL672017.10        108453-108554
            103-984             BC147626.1         1-882
            985-1075            AL672017.10        112992-113082
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 38.3 cM"
     gene            1..1075
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="claudin 34B4"
                     /db_xref="GeneID:619294"
                     /db_xref="MGI:MGI:3588232"
     exon            1..142
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            143..209
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            210..1075
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    214..216
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="upstream in-frame stop codon"
     CDS             235..870
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /codon_start=1
                     /product="claudin 34B4"
                     /protein_id="NP_001343325.1"
                     /db_xref="CCDS:CCDS53116.1"
                     /db_xref="GeneID:619294"
                     /db_xref="MGI:MGI:3588232"
                     /translation="

MLIKNRCNSQMGGFALTTVAWLICCISIGLPQWRVWHFQDPVVFKSTTAFVGMWRVCTLQYDEDFRNMRICHQYNYHDTFLPLNIRMIQQLLLVSSFFGLVGKVTTIIALWNVCQGRVHRKATYNPFGLSGILNIISSSFICLAILINYVSIIFQEGIIFPPSFNIPSQPDTQEIGSAMALAFIAAVLFLLSGTILLTSNFPVDKPVCSKY"

     misc_feature    289..828
                     /gene="Cldn34b4"
                     /gene_synonym="4930428D18Rik"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

agaattagaagaagtccagtattaagccagactcagagctgatggtaaaggaacctcaaaggacaagtgagaggacccctttccttgtcagctccactggactccatacctgactgccctgccacataatctaccaccatcattgctgtattgcacatagccaatgtgaaggaaattataaagaaggtgaaaactaagtttgctgcaggttgctgaatattcactgtgatcatcatgttaatcaaaaaccgttgcaatagccaaatgggaggctttgctttgacaactgtggcttggctaatttgctgtatctccataggcttacctcagtggcgtgtgtggcacttccaagaccctgtggtctttaagtctaccacagcatttgttggcatgtggagagtctgtactctccagtatgatgaggactttaggaatatgagaatatgtcaccaatacaactaccatgataccttccttccattgaatatcagaatgatccaacaattgctactggtctctagcttttttggactggttggaaaagtcaccaccattattgccctttggaatgtgtgtcaggggagagtacatagaaaggccacttacaatccatttggtctatctggaattctgaacatcatttctagcagctttatttgccttgccatattgattaattatgtatctatcatattccaggagggtataatatttccaccatctttcaatataccttcccagccagacactcaggaaattggaagtgccatggccttggcatttatagctgcagttttatttctattaagtggcacaattttgcttacttcaaattttcctgtagacaagccagtatgttctaaatattaaaagtaaatttctactttacataacattcaaaatccaaagttatctgtaatgaaggaatgtgtctacataaattttcaaagaactcaatttagcctttgaggaaaaatgaccatgttggtctcttatattttctgtattcttgtttgtttcattacttcattgctggattatggactttcaaaaaataaaatctaatccataatcc

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