LOCUS       NM_001310654            3276 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus claudin 34C1 (Cldn34c1), transcript variant 3, mRNA.
ACCESSION   NM_001310654 XM_006528409
VERSION     NM_001310654.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3276)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK032219.1 and BY582041.1.
            
            On Jul 17, 2015 this sequence version replaced XM_006528409.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR, lacks a
            portion of the 5' coding region and initiates translation at a
            downstream start codon, compared to variant 1. The encoded isoform
            (3) has a shorter N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032219.1, SRR1660821.360443.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3273              AK032219.1         1-3273
            3274-3276           BY582041.1         405-407
FEATURES             Location/Qualifiers
     source          1..3276
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.81 cM"
     gene            1..3276
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="claudin 34C1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
     exon            1..115
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            116..231
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    200..202
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="upstream in-frame stop codon"
     exon            232..3276
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..892
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="claudin 34C1 isoform 3"
                     /protein_id="NP_001297583.1"
                     /db_xref="CCDS:CCDS81167.1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
                     /translation="

MVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSMLSYPSLAFVNIWEAYICHHNHNSSHLRDCHYYTCHNNLVPLDIRVSQILLQVANVVGLVGTVCSVFALQQLYTEELHKNNDYNPFVLSAVLNAIASTFIFLAVMCNHLSVPSKEEVSFLQSFQMPIFSNAQRAGRAMGLAYISAILFLLSAIIFISYCPSMEIKMFPRV"

ORIGIN      

gaatgggcgagcggtcgcgccgttgggaggagcagtccggacccatgcccgtgcaggcaggacatggggagagcacgcagcgacaggcatctggctttctgagccctgggatttgaatggaatactacacagctactaaaaacaaggacatcttgaaatttgcagtcagatgcatggaacgagaaaaggtcatcctgagtgatgtaaaccagatccagaaatacaaacatgtttccacatatttgatgccagcatggtcctgctaaacaagtctgccaatcaccaaataagaggtttcactttagctacaatagcatgcataatgtgcaatacctctatggcccttccagaatggcgaatttgctacttgaacaactccatgctttcctacccaagtctggcttttgtgaatatttgggaggcctacatctgccaccacaaccacaactcaagccacctgagagattgccattactacacctgccataacaaccttgttcctttggatatccgggtatctcaaattctgctccaggttgcaaatgttgttggtctggttgggacagtttgttctgtctttgctctacagcagttatacacagaggaactgcataagaataatgactacaatccatttgttctttcagctgtcctcaatgctattgctagcacctttatttttcttgctgttatgtgtaatcacctctccgtgcccagcaaggaagaggtatctttcctgcaatctttccaaatgccaattttttccaatgctcaaagagcaggcagagccatgggattggcatacatatctgccatattgtttttattaagtgctataatttttatttcttactgtccttcaatggaaatcaaaatgtttccccgtgtctgaaaataaatttgcagcatacataaccttgaaaatcaaaatgtcttggcaatggttttggggacctagactgagatgtaatgggagatatttttaaaatattaacttagattttctaaggacataaagccctaccctatgtatcctatgacagaaaatggcaaaatgacatcaagcattctttcctatttggtttattacttctttggttgaattttttggtttagttttttttcatgtttttgtttatttgtttgttttgatttttgttcatttttatcattccaacttgccaattttgttttatagaatctaaattttaaatattgtttgtcaaggtaaataatcaataaatatagttgtattagtcatggatctctaaaggacagaacatatagaatccatctctcacatacaactttattctctctctctcactctttcccttcctctcccttctccccttctctctctctctctctctctctctctctctctctctctctctctctctctctcttcagattgcaaagggagatttccttgtctggctacattatttcttttaaagtttaagaattatccactatgttcatagcaaccttatttataatagctataagctggaacgaacccagatgtccctcaagaaaggaatggatacagaaaatatggtacatttacacaatggagtactactcagcaattaaaaacagtgaatttatgaaattcttaggcaaatggatagatttggaggatatcatcctaaatgaggtaacccaatcacaaaaggaaacacatgatatgtactcactgataagtggatattagcccagaaacttagaatacacaagacacaatttgcaaaacacatgagtctcaagaagaaggaagagcaaagtgtggatacatcctttcttcttaaaatggggaacaaaataccaatggaaggagttacaaaggcaaagttcggaacagatcctgaaggaacaaccatccagagactgccctacctggggatacaccccataaacaactaccaaacacagtcactaggtagatgccaataagaggctgctgagaggagcctcatatagctgtctcttgtgaggctctgctagtgcctggcaaatacagaagtggatgctcacaattatccattggacagagcacatgggtcccaatgaaggagccagagaaatactcattgagctggaggggtctgaagccctataggtggaacatcaatatgaactaatcagtacccccaagctccttggaaccataccaacaatcaaagaaaacatatggttgaacttgtggctctagctatatatgtagcagatgatggcctaatcagtcatcaaaggaaggagaggcccttggtcttgggaaggctctatgccccagtacaggggaatgccaggagtaggaatcagagtgggtgggttggggagtagggggattggggagggaataggggatttttggaggggaaactaagaaaggggctaacatttgaaatgtaaataaagaaaatatctaaaaagaaagaattattcatttaaaattaaattcccggaaatgttattaccccagaaaatatcatttaattttatttgcatctaatttgcacaatctgcctcttaggattataattcacacttgtacacatcatacacacaaacacaaacacacaccacacacatttgtgtagtgtccccatctgcctattacccatgacattttaataattttggtttgctgaacaaatttaatcaatgtcttctcagttaactaactctggttgagctctttagaaaatgtactttctgggtgatgccatgttctttgtactgaatgttaatatataggtgtcttatagtacctgcctcttactgatacaaggtttgatacaattgttggtagatccttgaggagaagacttaatttcacttaagctgaatggtttccccaactaaaagtttcatctccatgtggtccctgtttgtagcaatggaatattagcattccatgaggtcattggttgatgtgtttctaattagcagaaaggattttagagagtttgaactactatgtctatttgctcactctgaattcttatgtatatcaagaagttggagtaactgcttcattcttcccctctactttcaataatttataaaagaatttgaaggtattatttagattttgtttgtactttttggtttttgaatattgaagtagttggtgttgtttcatgagttaactttcgtccatttttacgtatgtaaataatcaagatcttgaggtgtatttacagagagcagtgattattccactgtgtttcatttcaagcacttaataaatgaacaaacaaatgctaa

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