LOCUS       NM_001310652            3160 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus claudin 34C1 (Cldn34c1), transcript variant 2, mRNA.
ACCESSION   NM_001310652 XM_006528408
VERSION     NM_001310652.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK032219.1, BX521033.1 and BY582041.1.
            
            On Jul 17, 2015 this sequence version replaced XM_006528408.2.
            
            Transcript Variant: This variant (2) lacks two alternate exons in
            the 5' coding region and initiates translation at an alternate
            start codon, compared to variant 1. The encoded isoform (2) has a
            distinct N-terminus and is longer than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660819.144421.1, BX521033.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                AK032219.1         1-45
            46-588              BX521033.1         2-544
            589-3157            AK032219.1         705-3273
            3158-3160           BY582041.1         405-407
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.81 cM"
     gene            1..3160
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="claudin 34C1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
     exon            1..115
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..776
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="claudin 34C1 isoform 2"
                     /protein_id="NP_001297581.1"
                     /db_xref="GeneID:73061"
                     /db_xref="MGI:MGI:1920311"
                     /translation="

MGERSRRWEEQSGPMPVQAGHGESTQRQASGFLSPGICFHIFDASMVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSMLSYPSLAFVNIWEAYICHHNHNSSHLRDCHYYTCHNNLVPLDIRVSQILLQVANVVGLVGTVCSVFALQQLYTEELHKNNDYNPFVLSAVLNAIASTFIFLAVMCNHLSVPSKEEVSFLQSFQMPIFSNAQRAGRAMGLAYISAILFLLSAIIFISYCPSMEIKMFPRV"

     exon            116..3160
                     /gene="Cldn34c1"
                     /gene_synonym="3110007F17Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaatgggcgagcggtcgcgccgttgggaggagcagtccggacccatgcccgtgcaggcaggacatggggagagcacgcagcgacaggcatctggctttctgagccctgggatttgtttccacatatttgatgccagcatggtcctgctaaacaagtctgccaatcaccaaataagaggtttcactttagctacaatagcatgcataatgtgcaatacctctatggcccttccagaatggcgaatttgctacttgaacaactccatgctttcctacccaagtctggcttttgtgaatatttgggaggcctacatctgccaccacaaccacaactcaagccacctgagagattgccattactacacctgccataacaaccttgttcctttggatatccgggtatctcaaattctgctccaggttgcaaatgttgttggtctggttgggacagtttgttctgtctttgctctacagcagttatacacagaggaactgcataagaataatgactacaatccatttgttctttcagctgtcctcaatgctattgctagcacctttatttttcttgctgttatgtgtaatcacctctccgtgcccagcaaggaagaggtatctttcctgcaatctttccaaatgccaattttttccaatgctcaaagagcaggcagagccatgggattggcatacatatctgccatattgtttttattaagtgctataatttttatttcttactgtccttcaatggaaatcaaaatgtttccccgtgtctgaaaataaatttgcagcatacataaccttgaaaatcaaaatgtcttggcaatggttttggggacctagactgagatgtaatgggagatatttttaaaatattaacttagattttctaaggacataaagccctaccctatgtatcctatgacagaaaatggcaaaatgacatcaagcattctttcctatttggtttattacttctttggttgaattttttggtttagttttttttcatgtttttgtttatttgtttgttttgatttttgttcatttttatcattccaacttgccaattttgttttatagaatctaaattttaaatattgtttgtcaaggtaaataatcaataaatatagttgtattagtcatggatctctaaaggacagaacatatagaatccatctctcacatacaactttattctctctctctcactctttcccttcctctcccttctccccttctctctctctctctctctctctctctctctctctctctctctctctctctctcttcagattgcaaagggagatttccttgtctggctacattatttcttttaaagtttaagaattatccactatgttcatagcaaccttatttataatagctataagctggaacgaacccagatgtccctcaagaaaggaatggatacagaaaatatggtacatttacacaatggagtactactcagcaattaaaaacagtgaatttatgaaattcttaggcaaatggatagatttggaggatatcatcctaaatgaggtaacccaatcacaaaaggaaacacatgatatgtactcactgataagtggatattagcccagaaacttagaatacacaagacacaatttgcaaaacacatgagtctcaagaagaaggaagagcaaagtgtggatacatcctttcttcttaaaatggggaacaaaataccaatggaaggagttacaaaggcaaagttcggaacagatcctgaaggaacaaccatccagagactgccctacctggggatacaccccataaacaactaccaaacacagtcactaggtagatgccaataagaggctgctgagaggagcctcatatagctgtctcttgtgaggctctgctagtgcctggcaaatacagaagtggatgctcacaattatccattggacagagcacatgggtcccaatgaaggagccagagaaatactcattgagctggaggggtctgaagccctataggtggaacatcaatatgaactaatcagtacccccaagctccttggaaccataccaacaatcaaagaaaacatatggttgaacttgtggctctagctatatatgtagcagatgatggcctaatcagtcatcaaaggaaggagaggcccttggtcttgggaaggctctatgccccagtacaggggaatgccaggagtaggaatcagagtgggtgggttggggagtagggggattggggagggaataggggatttttggaggggaaactaagaaaggggctaacatttgaaatgtaaataaagaaaatatctaaaaagaaagaattattcatttaaaattaaattcccggaaatgttattaccccagaaaatatcatttaattttatttgcatctaatttgcacaatctgcctcttaggattataattcacacttgtacacatcatacacacaaacacaaacacacaccacacacatttgtgtagtgtccccatctgcctattacccatgacattttaataattttggtttgctgaacaaatttaatcaatgtcttctcagttaactaactctggttgagctctttagaaaatgtactttctgggtgatgccatgttctttgtactgaatgttaatatataggtgtcttatagtacctgcctcttactgatacaaggtttgatacaattgttggtagatccttgaggagaagacttaatttcacttaagctgaatggtttccccaactaaaagtttcatctccatgtggtccctgtttgtagcaatggaatattagcattccatgaggtcattggttgatgtgtttctaattagcagaaaggattttagagagtttgaactactatgtctatttgctcactctgaattcttatgtatatcaagaagttggagtaactgcttcattcttcccctctactttcaataatttataaaagaatttgaaggtattatttagattttgtttgtactttttggtttttgaatattgaagtagttggtgttgtttcatgagttaactttcgtccatttttacgtatgtaaataatcaagatcttgaggtgtatttacagagagcagtgattattccactgtgtttcatttcaagcacttaataaatgaacaaacaaatgctaa

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