2024-09-28 09:23:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001291104 3098 bp mRNA linear ROD 02-MAY-2024 DEFINITION Mus musculus fibroblast growth factor 11 (Fgf11), transcript variant 2, mRNA. ACCESSION NM_001291104 XM_006532189 VERSION NM_001291104.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3098) AUTHORS Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A., Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R., Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J., Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z., Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J., Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L., Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J., Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B., Jackson,S.P. and Balmus,G. CONSRTM Sanger Mouse Genetics Project TITLE Genetic determinants of micronucleus formation in vivo JOURNAL Nature 627 (8002), 130-136 (2024) PUBMED 38355793 REFERENCE 2 (bases 1 to 3098) AUTHORS Cho,J.H., Kim,K., Cho,H.C., Lee,J. and Kim,E.K. TITLE Silencing of hypothalamic FGF11 prevents diet-induced obesity JOURNAL Mol Brain 15 (1), 75 (2022) PUBMED 36064426 REMARK GeneRIF: Silencing of hypothalamic FGF11 prevents diet-induced obesity. Publication Status: Online-Only REFERENCE 3 (bases 1 to 3098) AUTHORS Meuser,M., Deuper,L., Rudat,C., Aydogdu,N., Thiesler,H., Zarnovican,P., Hildebrandt,H., Trowe,M.O. and Kispert,A. TITLE FGFR2 signaling enhances the SHH-BMP4 signaling axis in early ureter development JOURNAL Development 149 (1) (2022) PUBMED 35020897 REFERENCE 4 (bases 1 to 3098) AUTHORS Bedogni,F. and Hevner,R.F. TITLE Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development JOURNAL Front Mol Neurosci 14, 686034 (2021) PUBMED 34321999 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 3098) AUTHORS Tejedor,G., Laplace-Builhe,B., Luz-Crawford,P., Assou,S., Barthelaix,A., Mathieu,M., Kissa,K., Jorgensen,C., Collignon,J., Chuchana,P. and Djouad,F. TITLE Whole embryo culture, transcriptomics and RNA interference identify TBX1 and FGF11 as novel regulators of limb development in the mouse JOURNAL Sci Rep 10 (1), 3597 (2020) PUBMED 32107392 REMARK GeneRIF: Whole embryo culture, transcriptomics and RNA interference identify TBX1 and FGF11 as novel regulators of limb development in the mouse. Publication Status: Online-Only REFERENCE 6 (bases 1 to 3098) AUTHORS Dichmann,D.S., Miller,C.P., Jensen,J., Scott Heller,R. and Serup,P. TITLE Expression and misexpression of members of the FGF and TGFbeta families of growth factors in the developing mouse pancreas JOURNAL Dev Dyn 226 (4), 663-674 (2003) PUBMED 12666204 REFERENCE 7 (bases 1 to 3098) AUTHORS Hajihosseini,M.K. and Heath,J.K. TITLE Expression patterns of fibroblast growth factors-18 and -20 in mouse embryos is suggestive of novel roles in calvarial and limb development JOURNAL Mech Dev 113 (1), 79-83 (2002) PUBMED 11900978 REFERENCE 8 (bases 1 to 3098) AUTHORS Bachler,M. and Neubuser,A. TITLE Expression of members of the Fgf family and their receptors during midfacial development JOURNAL Mech Dev 100 (2), 313-316 (2001) PUBMED 11165488 REFERENCE 9 (bases 1 to 3098) AUTHORS Munoz-Sanjuan,I., Smallwood,P.M. and Nathans,J. TITLE Isoform diversity among fibroblast growth factor homologous factors is generated by alternative promoter usage and differential splicing JOURNAL J Biol Chem 275 (4), 2589-2597 (2000) PUBMED 10644718 REFERENCE 10 (bases 1 to 3098) AUTHORS Smallwood,P.M., Munoz-Sanjuan,I., Tong,P., Macke,J.P., Hendry,S.H., Gilbert,D.J., Copeland,N.G., Jenkins,N.A. and Nathans,J. TITLE Fibroblast growth factor (FGF) homologous factors: new members of the FGF family implicated in nervous system development JOURNAL Proc Natl Acad Sci U S A 93 (18), 9850-9857 (1996) PUBMED 8790420 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL603707.5 and U66203.1. On Apr 21, 2018 this sequence version replaced NM_001291104.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC066859.1, SRR7652917.1100071.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-655 AL603707.5 180855-181509 c 656-1063 U66203.1 1-408 1064-1249 U66203.1 493-678 1250-1286 AL603707.5 177394-177430 c 1287-3098 AL603707.5 175297-177108 c FEATURES Location/Qualifiers source 1..3098 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="11" /map="11 42.88 cM" gene 1..3098 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="fibroblast growth factor 11" /db_xref="GeneID:14166" /db_xref="MGI:MGI:109167" exon 1..848 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" misc_feature 581..583 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="upstream in-frame stop codon" CDS 656..1249 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="isoform 2 is encoded by transcript variant 2; fibroblast growth factor homologous factor 3; fibroblast growth factor 1d" /codon_start=1 /product="fibroblast growth factor 11 isoform 2" /protein_id="NP_001278033.1" /db_xref="CCDS:CCDS70218.1" /db_xref="GeneID:14166" /db_xref="MGI:MGI:109167" /translation="
MAALASSLIRQKREVREPGGSRPVSAQRRVCPRGTKSLCQKQLLILLSKVRLCGGRPTRQDRGPEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPEDTSSFTHFNLIPVGLRVVTIQSAKLGHYMAMNAEGLLYSSRRSGRAWYLGLDKEGRVMKGNRVKKTKAAAHFVPKLLEVAMYREPSLHSVPETSPSSPPAH"
misc_feature 863..1168 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="FGF domain, beta-trefoil fold, found in acidic and basic fibroblast growth factor (FGF) superfamily; Region: beta-trefoil_FGF; cl00060" /db_xref="CDD:469595" exon 849..959 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" exon 960..1063 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" exon 1064..1178 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" exon 1179..1286 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" exon 1287..3098 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /inference="alignment:Splign:2.1.0" regulatory 3074..3079 /regulatory_class="polyA_signal_sequence" /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="hexamer: ATTAAA" polyA_site 3093 /gene="Fgf11" /gene_synonym="Fgf-11; Fgf1d; Fhf-3; Fhf3" /note="major polyA site" ORIGIN
gggggtgacaatgagaaaaagcattatccagccagggggcctgggaaccccttttcactgaacctaaacagcctgaattttgagtcatatttgctggcagaggggggatttgaagaaagtgggagacccactccatttagagtatagaaaaggaaaaaagaaaacagagctgggctcctcttgacattgacagcagcctagggtgagctaatgtccacaaagcttaggacccacaccctgtgtaagagtaggctgggcaggagcggccccaaaatagggtagaaagaagcctcggggtattgagaacacatcttagaaatataggagggtcttgactgtgggatagaggaggtatcttctatctggtacagaggccagagaggagggaaggggaaagctttcattaggggacagaattcatgggtgaggtcagctgaggagtgcataggctgctggagccgctggagctagtcagggcccaagggtgggagccggtggtgttggggaacgtactggggtctggggtttctcttcagatcctgtgggtggggcggtgggttgggtcctgagcatgccctggtgagagggctcctcttggggagcccagggcgctccgggagcctgctggtttgggggtgtctcctcccggggcgcgatggcggcgttggccagtagcctgatccgacagaagcgggaggtccgcgagcccgggggcagccggcccgtgtcggcgcagcggcgcgtgtgtccccgcggtaccaagtcactttgccagaaacagctcctcatcctgctgtccaaggtgcgactgtgcggggggcgtcccacgcgacaggaccgcggcccagagcctcagctcaaaggcatcgtcaccaaactgttctgccgccagggtttctacctccaggcgaatcccgatgggagtatccagggcaccccagaggacaccagctccttcacccacttcaatctgattcctgtgggactccgtgtggtcaccatccagagtgccaagctgggtcactacatggccatgaacgctgaggggctattgtacagctcgcgtcgttctggccgggcctggtacctaggcctggacaaggaaggccgggtcatgaagggaaaccgagtcaagaagaccaaggcagctgcccactttgtgcccaagctcctggaggtggccatgtaccgggagccttctctccacagtgttcctgagacctccccttccagtccccctgcccactgagatatagtccctggactggaggctccctgctcttccagcaccggggttccaacactcaaggcaggaaggtaatactcttcaccctggctgagccagtctctgaagccatgtccttctttgcatcgtctcgaagccatagctttctaggtcggtccactggcactcagaatgcatctccttctctctctgctctaccttctgacttggtctggacaggttctgatagagctggtcaccccagccaggcagggccatccctatgttctgtgttggaacccaagtatgtatcctttccacgtctatccttgtcctagatggacacctcccacccctggctttaaaaaagaggccccctactgtagcaattggccttggtctgaattgggaccagtctcaggtcaccactgattaaaccttcttatcccagagacacccaattctagaacgtggtattctagacctttctggagccatacttcctcctgaatctcagttctaggacatagcccatgactctcagccctttcttcccggatggagctagggcctgtatagccatattattgtactagagtaagttctagacctacccttccactttctctagcaattaaaggatgagctatgggtagaactcagctatgattaattaaaaactgattggctctgagctgtgcttggtggcacacacctgtaattcagcacccgggaggctgaatcagacagatcctgagttggaggccatcctgggctacaatagcaaaaccctgtctcaaaagccaatacacacacacacatacacacacacacacacacacacacacagagagagagagagagaaagagagagagagagagagagagagagagaactaatcagtactgaacggatcaagaaccacttcttgcttttcctaaataattttctaaaaatagtccctccagaatactaaccttacttttacatggtttctagtttcagcattccaactagggttctgccagggagacaagagtctggggaaagatacaggaattctggaagaatatacctggctcctagaagggaagctgagagggagaaaatgccatggtatgattgaacctgtgtctgaacacttagctacctcagcaggaattccttccagatcccttttaaagctgaggactttcgttctgatatggtatgctgcatctgtgaggtaaaggagaggaggagaatcaggaaataaaaggctagcctgggctacctagtgaggtcagggccagcctaggctatgtgagaccctgtctcaaacaacaggaagctaaggtctacaatgagaataactctagaattaaaaaggacaaatagggacacagccttgactccccctcacagcagagagacccccaactcagcaataagttcaacttctccgagccctctacaggtcaggcttaggaaacgaggagcctcttgggctcccagacctcatatgtatccccagagcttctaactaaatagaatttactttactttacagcttttaaacctcaggtgggttctaagtacccaaaaaggacctgaaaaacggagaaagccatggggaacctctagtaaaataggaggtagattctgagtctagcagatgtaggtggaaacgtctattgaggtcctaagggaggggctagtgctcaaagacaggtcacttttcctcaggcccttttacttctggcttgttgcaagagatgcccccctccctcatacaaaccccgctcaggctccgcccatctcctggcactgctctcaggggacggggtctccacttcatgctttctgtaattaaagatgatttatacaaccgga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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