2024-06-29 20:29:03, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001290770 7153 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus trophinin (Tro), transcript variant 4, mRNA. ACCESSION NM_001290770 VERSION NM_001290770.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 7153) AUTHORS Park SK, Yoon J, Wang L, Shibata TK, Motamedchaboki K, Shim KJ, Chang MS, Lee SH, Tamura N, Hatakeyama S, Nadano D, Sugihara K and Fukuda MN. TITLE Enhancement of mouse sperm motility by trophinin-binding peptide JOURNAL Reprod Biol Endocrinol 10, 101 (2012) PUBMED 23194061 REMARK GeneRIF: The expression of trophinin in the mouse sperm tail causes a significant increase in sperm motility. Publication Status: Online-Only REFERENCE 2 (bases 1 to 7153) AUTHORS Shaut CA, Keene DR, Sorensen LK, Li DY and Stadler HS. TITLE HOXA13 Is essential for placental vascular patterning and labyrinth endothelial specification JOURNAL PLoS Genet 4 (5), e1000073 (2008) PUBMED 18483557 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 7153) AUTHORS Miyamoto-Sato E, Ishizaka M, Horisawa K, Tateyama S, Takashima H, Fuse S, Sue K, Hirai N, Masuoka K and Yanagawa H. TITLE Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes JOURNAL Genome Res 15 (5), 710-717 (2005) PUBMED 15867431 REFERENCE 4 (bases 1 to 7153) AUTHORS Bertrand M, Huijbers I, Chomez P and De Backer O. TITLE Comparative expression analysis of the MAGED genes during embryogenesis and brain development JOURNAL Dev Dyn 230 (2), 325-334 (2004) PUBMED 15162511 REMARK GeneRIF: Maged3 expression is restricted to the central nervous system where it was mostly detected in postmitotic neurons REFERENCE 5 (bases 1 to 7153) AUTHORS Nadano D, Sugihara K, Paria BC, Saburi S, Copeland NG, Gilbert DJ, Jenkins NA, Nakayama J and Fukuda MN. TITLE Significant differences between mouse and human trophinins are revealed by their expression patterns and targeted disruption of mouse trophinin gene JOURNAL Biol Reprod 66 (2), 313-321 (2002) PUBMED 11804944 REMARK GeneRIF: Targeted disruption of the trophinin gene in the mouse showed a partial embryonic lethality in a 129/SvJ background REFERENCE 6 (bases 1 to 7153) AUTHORS Saburi S, Nadano D, Akama TO, Hirama K, Yamanouchi K, Naito K, Tojo H, Tachi C and Fukuda MN. TITLE The trophinin gene encodes a novel group of MAGE proteins, magphinins, and regulates cell proliferation during gametogenesis in the mouse JOURNAL J Biol Chem 276 (52), 49378-49389 (2001) PUBMED 11590179 REFERENCE 7 (bases 1 to 7153) AUTHORS Chomez P, De Backer O, Bertrand M, De Plaen E, Boon T and Lucas S. TITLE An overview of the MAGE gene family with the identification of all human members of the family JOURNAL Cancer Res 61 (14), 5544-5551 (2001) PUBMED 11454705 REFERENCE 8 (bases 1 to 7153) AUTHORS Suzuki N, Nadano D, Paria BC, Kupriyanov S, Sugihara K and Fukuda MN. TITLE Trophinin expression in the mouse uterus coincides with implantation and is hormonally regulated but not induced by implanting blastocysts JOURNAL Endocrinology 141 (11), 4247-4254 (2000) PUBMED 11089559 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC075630.1 and AL672150.19. Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1 and 4 encode the same isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC075630.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-6555 BC075630.1 1-6555 6556-7153 AL672150.19 95247-95844 c FEATURES Location/Qualifiers source 1..7153 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 68.46 cM" gene 1..7153 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="trophinin" /db_xref="GeneID:56191" /db_xref="MGI:MGI:1928994" exon 1..41 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 42..111 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" misc_feature 52..54 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="upstream in-frame stop codon" CDS 67..6330 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="isoform 1 is encoded by transcript variant 4; melanoma antigen, family D, 3; trophinin-2; necdin and trophinin like" /codon_start=1 /product="trophinin isoform 1" /protein_id="NP_001277699.1" /db_xref="CCDS:CCDS30465.1" /db_xref="GeneID:56191" /db_xref="MGI:MGI:1928994" /translation="
MDRRNDHGHRVPTFQGPLPPAGSLGLPFSPDVQSETTEKDPPIASRSKKNKNKKNSIKPMDKTTPAPPPVPSANDNASNKPKVTLQALNLPMFTQISQASATTEAPNIQASVTSQTQKAKTMRVTPKVSLTGSEDATTQLKPPLQALNLPVTTPTIQTPVANESANSLASTAVNKSKKASTANNAANKTVPSAAEISLASAATHTVTTQGQAAKETGSIQTIAATARSKKNSKGKRTPAKTTNTDNEYVEASNAIEASSRQIGASGRQTEASNRQIEASSRQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEVSSRQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASSRQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSEAPPAIQTVTNHALSVTVRIRRGSRARKAANKNRATESQAQIAEQGAQASEASISALETQVAAAVQALADDYLAQLSLEPTTRTRGKRNRKSKHPNGEERTGNNYRRIPWGRRLPPPRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYEDYFPEIIERASYALEKMFRVNLKEIDKQNNLYILISTQESSAGIMGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLHPGVKHSLFGEVKKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMDIQAAAVAVAEAKARAEARAQMGIGEEAVAGPWNWDDMDINCLTREELGDDAQAWSRFSFEIEPRAQENADPTTNVLFNQGATTRNSFSDGAGISFGGITNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGRNSITFGSVPNTSANFSSAPSISFGDTPNTSTSFSGGANSSFSGTPSTSAPFCNTASISFGGAPSTSTSFSTASISFGGAPSTSTSLSTASISFGGAPSTSTSFSTASISFGGAPSTSTSLSTASISFGGAPSINSSSGGSSVSFGGAPTTSTSFSGGPCISFGGAPCTTASISGGASSGFGSTLCSTNPGFSALSTNTSFGSAPTTSTVFSGAVSTTTGFGGTLSTSVCFGSSPYSGAGFGGTLSTSISFGGSPSTNTGFGGTLSTSVSFGASSSTSSDFGGTLSTSVSFGGSSGANAGFGGTLNSSTSFGGAISTSTGFGSALNNSANFGGAISTSFSGVLNSSASFGGAINTSAGFGSTLNSSASFGSALSTSASFGGVLNGSAGFGGALNTNATFGGVLNGSAGFGGAMNTNATFGGALNSNAGFGGAISTSTNFGGALNNSAGFGGAMNTSASFGGALNNSAGFGGAISTNATFGGALNNSAGFGGAISTNATFGGALNNSAGFGGAISTSASFGGTLNNSASFGGAINTSASFGGVLNNSAGFGGAINTSANFGGALTNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTNASFGGAISNSPDFGGAFSTSVGFGGTLNTTDFGSTHSNSISFGSAPTTSVSFGGSHSTNLCFGGAPSTSLCFGSASNTNLCFGGSNSTNCFSGATSANFNEGHSISFGNGLSTSAGFGNGLGTSAGFGSSLGTSTGFGGSLGPSASFNGGLGTSTGFGGGLGTSTDFSGGLNHNADFNGGLGNSAGFNGGLNTNTDFGGELGTSAGFGDGLGSSTSFGAGLVTSDGFAGNLGTNTGFGGTLGTGAGFSVSLNNGNGFGNGPNASFNRGLNTIIGFGSGSNTSNGFTGEPNTGSSFSNGPSSIVGFSGGPSTGAGFCSGPSTGGFGGGPSTGPGFGGPSTGPGFGGPSTGGGFGGPNTGGGFGGPSTGGGFGGPSTGGGFGGPSTGGGFGGPSTAAGFGSGLSTSTGFGGGLNTSAGFSGGPPSTGTGFGGGASSHGGCGFPYG"
misc_feature <355..>1638 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="polarized growth protein Scy; Region: growth_prot_Scy; NF041483" /db_xref="CDD:469371" misc_feature 868..>1401 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="Mechanosensitive ion channel porin domain; Region: MscS_porin; pfam12795" /db_xref="CDD:432790" misc_feature 1852..2334 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="MAGE homology domain; Region: MAGE; pfam01454" /db_xref="CDD:426270" misc_feature 2641..6309 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /note="Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport]; Region: FhaB; COG3210" /db_xref="CDD:442443" exon 112..1737 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 1738..1842 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 1843..1906 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 1907..1986 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 1987..2078 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 2079..2158 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 2159..2201 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 2202..2264 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 2265..2379 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 2380..6341 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" exon 6342..7153 /gene="Tro" /gene_synonym="Maged3; Maged3l; magphinin; Tnn; Trol" /inference="alignment:Splign:2.1.0" ORIGIN
gagaaatgaaatggagactaggtgtgaatgctgaacaagaggctcggctattagcctttcagaaagatggatagaagaaatgaccatggtcatcgggtgcccacattccagggccctctgcctcccgctgggagcctagggcttcctttctctccagatgtacagtcggagaccacagaaaaggacccaccaattgccagccgatctaagaaaaacaagaacaagaagaattctattaagcctatggataagaccacaccggctccccctccagtcccatctgccaatgataatgctagcaacaagcctaaagtaactttgcaggctttaaacctaccaatgttcacccagatcagtcaggcttcagctactactgaggcacccaatatccaggcttcagttacttctcagacccagaaagccaagacaatgagagttactcccaaggtatccctaactggcagtgaggatgccactacacagctgaagccaccattacaggccctaaacctaccagttaccacaccgactatccagactccagttgccaatgagtcagctaattccctggcctcaacagctgtcaacaaatccaagaaagcttctacggcaaacaatgctgccaataagactgtacctagtgctgctgagatctcattggcttcggctgctacccacacagttactacccaaggccaagctgccaaggagacaggtagtatccagactatagcagccactgcccgaagcaagaaaaattccaaaggaaaaagaacacctgctaagaccacaaatactgacaatgaatatgtagaggcctcaaatgccattgaggcatctagcagacagattggggcatctggcagacagactgaggcatctaacagacagattgaggcatctagcagacagactgaggcatctaacagacagactgaggcatctagcagacagactgaagcatctagcagacagactgaaacatctaacagacagattggggcatctaacagacagatcatggcatctaacagacagattggggcatctaacagacagattgaggcatctaacagacagattggggcatctaacagacagacagaggtatctagcagacagattgaggcatctaacagacagattggggcatctaacagacaaactgaggcatctaacagacagattggggcatctaacagacagactgaggcatctaacagacagattggggcatctaacagacagactgatgcatctaacagacagactgatgcatctaacagacagactgaggcatctagcagacagacagaggcatctagcagacagacagaggcatctagcagacagactgaggcatctagcagacaaattgaggcatcagctgcagctgtgaggcccaaaaagcccagggggaagaagggtaacaataaaggctcaaattctgcttctgagccctctgaggctccacctgccattcaaacggttacaaaccatgccctatctgtcactgtacggatcaggagagggtctagggctcgaaaggctgccaataagaatcgggcaactgaaagccaagctcagatcgctgaacaaggagctcaggcctctgaggccagcataagtgccctggagactcaggttgctgctgctgtccaggccttggcagatgactatctggctcagttgagtttagaacccacgaccagaacccggggcaagaggaaccgaaagtctaagcatcccaatggagaagaaagaactggaaataattacaggcggatcccatggggcaggcggcttccaccaccccgagatgtggccattttgcaggaaagggcaaataagttggtgaaatatctgttggttaaagaccagacaaagatcccaatcaagcgctcagatatgctgaaggatgtcatccaagaatatgaggactatttcccagagatcattgaacgagcaagctacgctctggagaagatgtttcgagtcaatctgaaggaaattgataagcaaaataacttgtatattcttatcagcactcaggagtcatctgcaggcataatgggaacgaccaaggacacacctaagctgggtctcctcatggtgattctgagtgtcattttcatgaatggcaacaaggccagtgaggctgtcatctgggaggtgctgcgcaagttgggactgcaccctggggtaaaacattcactctttggagaagtgaagaaactcatcacagatgaatttgtgaagcagaaatatctggaatacaagagggtccccaacagcagaccacctgagtatgaattcttctggggcctacggtcttaccatgagactagcaagatgaaagtcctgaaatttgcatgcaaggtacagaagaaagatcccaaagactgggctgctcagtaccgcgaggcagttgagatggacattcaggctgcagctgtggctgtggctgaggctaaggccagggctgaggcaagagcccaaatggggattggagaggaagctgtggctggtccctggaattgggatgacatggatattaactgcctaacaagggaagagttgggtgatgatgcgcaggcctggagcagattttcctttgaaattgaacccagagcccaagaaaatgcagatcctaccactaatgtcctcttcaaccaaggagctactaccagaaatagctttagtgatggtgctggtattagctttggtggtataaccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaatcccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaatcccagtggtggctttggtggcatatccaaccccagtggtggctttggtggcatatccaatcccagtggtggctttggtggcatatccaatcccagtggtggctttgggggcagaaatagcattacttttgggagtgtacccaacacctctgccaacttcagcagtgcaccgagcattagctttggtgacacacctaacactagcaccagtttcagtggcggagccaacagtagcttcagtggcacacctagtactagtgcccctttctgtaacacagcaagcattagctttggtggtgcacccagcactagcaccagctttagcacagcgagcattagctttggtggtgcacccagcactagcaccagcttaagcacagcaagcattagctttggtggtgcacctagcactagcaccagcttcagcacagcgagcattagctttggtggtgcacccagcactagcaccagcttaagcacagcaagcattagctttggtggtgcacccagcattaatagtagtagtggtggatccagcgttagctttggtggtgctcctaccaccagtaccagtttcagtggtggaccctgtattagttttggtggtgcaccttgtaccactgccagtattagtggtggagccagctctggctttggaagcacgctttgcagtaccaaccctggctttagtgcactcagcacaaacaccagcttcggcagtgcaccaactacaagcactgtgttcagtggtgcagttagtaccaccactggctttggaggcacacttagcaccagtgtctgctttggtagttctccctactctggcgctggctttggaggcacacttagtaccagtatctcctttggtggttctcctagcaccaatactggttttggtggtacactcagcaccagtgtttccttcggtgcttcttctagcaccagctctgactttggtggcacactaagcactagtgtcagctttggtggctcttctggtgccaatgctggctttggcggtacactcaacagcagtaccagctttggcggtgccatcagcaccagcactggctttggcagtgcactcaataacagtgccaactttggtggtgccataagtaccagctttagtggtgtactcaatagcagtgccagctttggtggtgccatcaacaccagtgctggcttcggcagtacactcaacagcagtgccagctttggcagtgcactcagcaccagtgccagctttggtggtgtactcaatggcagtgctggctttggtggtgccttgaacaccaatgccacctttggtggtgtactcaatggcagtgctggctttggtggtgccatgaacaccaatgccacctttggtggtgcactgaatagtaatgccggctttggcggtgccatcagtacgagtaccaacttcggtggtgcactgaataacagtgctggctttggcggtgccatgaacactagtgccagctttggtggtgcactgaataacagtgctggctttggcggtgccatcagtacgaatgccacctttggtggtgcactgaataacagtgctggctttggtggtgccatcagtacgaatgccacctttggtggtgcactgaataacagtgctggctttggtggtgccatcagtacgagtgccagcttcggtggtacactgaataacagtgctagctttggcggtgccatcaacactagtgccagcttcggtggtgtactgaataacagtgctggctttggcggtgccatcaacaccagtgccaactttggtggcgcactgactaacagtgctggctttggcggtgccatcagtacgagtgccagctttggtggtgcactgaataacagtgctggctttggtggtgccatcagtacgagtgccagctttggtggtgcactgaataacagtgctggctttggcggtgccatcagcaccaatgccagctttggtggagcaatcagcaacagtcctgactttggtggtgcattcagtaccagtgttggctttggtggcacacttaataccactgactttggtagtacccatagcaacagcattagctttggcagtgctcccactaccagcgttagctttggtgggtctcatagcactaacctctgtttcggtggagcacccagcaccagtctctgttttggcagtgcatctaacaccaacctatgctttggaggctctaacagcaccaactgctttagtggtgctaccagtgccaatttcaatgaggggcacagcatcagttttgggaatgggctaagtaccagtgctggatttggaaatgggctgggcaccagtgctggctttggcagcagccttggtaccagcactggctttggtggaagcttaggccccagtgctagcttcaatggtggcctgggcaccagcactggctttggcggtggactaggcaccagcacggatttcagtggtggactaaatcataatgctgacttcaatggaggactgggtaacagtgctggcttcaatggtggactaaacactaacactgattttggtggtgaactgggcactagcgctggctttggtgatggactgggcagcagcaccagctttggtgcaggactggtcactagtgatggctttgctggtaacctgggcaccaatactggttttggtggcacacttggcactggtgcaggctttagtgtaagcctcaacaatggcaatggctttggcaatgggcctaatgccagcttcaacagaggactgaataccatcattggctttggcagtggttccaacaccagcaatggctttactggtgaacccaacactggctccagcttcagtaatggacccagttctattgttggctttagtggtggaccaagcactggtgctggcttctgcagtggaccaagcactggtggcttcggtggtggaccaagtacaggacctggcttcggtggaccaagtacaggacctggcttcggtggaccaagcactggaggtggctttggaggaccaaatactggaggtggctttggaggaccaagcactggaggtggctttggaggaccaagcactggaggtggcttcggaggaccaagcactggaggtggcttcggaggaccaagcactgcagctggctttggtagtggactgagcaccagcactggctttggtggtggactgaataccagtgctggattcagtggtggaccgccaagcaccggtactggctttggtggtggagcctctagccatggtggctgtggcttcccttacggctagtgaagattcaggcttgttccccctgtttacagataacgctaactgcaacaatacttcccatggagccaatgtgcagctttggaattgttgtccacgcagcagcctgagcactattacccatcagctgagtgaaacactgaaaaatctgctgttcctgctttgtgtttgcttcctgtgttgttgtcatattttggtattagagttacattaaatttgccaaaggaacctgagcttattctgtcctttaatgtgactgcatgtgatgttttgggttcatagaacagctagggttcaacttaactttttgggaaccatggggctccagctaaaaggcaggcatttctcagagtcagagagctctgggaaagtgttctctggtaggccaagggataatagcttgagcaaagatatggaagcgggaagcctaaggtatagggcaaatagaaagtaaactcatattaattttgggtagttgtgtaagaatatagggataagaagggaagaaactaggaattgacctgggagcaagagggcattttcttgggataggaaagaaaacatagtatggtgtgtagggcctagatcaattgagagactggggactggtatggaagataagtatgagatggagctagagagatggctccgtggttaagagcactgacagctcttccaaaggttctgagtggctcacaaccatctgtaatgggatctgatgcccttttctgtgtgtctgaagacagctacagtgtactcctaataaataaataaataaataaataaataaataaataaataaagtgtgagatggtggaaagggtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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