2024-06-29 21:18:13, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001168248 3637 bp mRNA linear ROD 08-APR-2024 DEFINITION Mus musculus RecQ mediated genome instability 1 (Rmi1), transcript variant 1, mRNA. ACCESSION NM_001168248 VERSION NM_001168248.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3637) AUTHORS Guiraldelli,M.F., Eyster,C. and Pezza,R.J. TITLE Genome instability and embryonic developmental defects in RMI1 deficient mice JOURNAL DNA Repair (Amst) 12 (10), 835-843 (2013) PUBMED 23900276 REMARK GeneRIF: results demonstrate the importance of RMI1 in maintaining genome integrity and normal embryonic development REFERENCE 2 (bases 1 to 3637) AUTHORS Xue,X., Raynard,S., Busygina,V., Singh,A.K. and Sung,P. TITLE Role of replication protein A in double holliday junction dissolution mediated by the BLM-Topo IIIalpha-RMI1-RMI2 protein complex JOURNAL J Biol Chem 288 (20), 14221-14227 (2013) PUBMED 23543748 REFERENCE 3 (bases 1 to 3637) AUTHORS Suwa,A., Yoshino,M., Kurama,T., Shimokawa,T. and Aramori,I. TITLE Glucose regulates RMI1 expression through the E2F pathways in adipose cells JOURNAL Endocrine 40 (1), 56-61 (2011) PUBMED 21432623 REMARK GeneRIF: Glucose regulates RMI1 expression through the E2F pathways in adipose cells. REFERENCE 4 (bases 1 to 3637) AUTHORS Chen,H., You,M.J., Jiang,Y., Wang,W. and Li,L. TITLE RMI1 attenuates tumor development and is essential for early embryonic survival JOURNAL Mol Carcinog 50 (2), 80-88 (2011) PUBMED 21229605 REMARK GeneRIF: These results demonstrated a dual-role of RMI1 in embryonic development and tumor suppression. REFERENCE 5 (bases 1 to 3637) AUTHORS Suwa,A., Yoshino,M., Yamazaki,C., Naitou,M., Fujikawa,R., Matsumoto,S., Kurama,T., Shimokawa,T. and Aramori,I. TITLE RMI1 deficiency in mice protects from diet and genetic-induced obesity JOURNAL FEBS J 277 (3), 677-686 (2010) PUBMED 20050919 REMARK GeneRIF: results suggest that the regulation of energy balance by RMI1 is attributable to the regulation of food intake and E2F8 expression in adipose tissue. REFERENCE 6 (bases 1 to 3637) AUTHORS Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J., Akizuki,M., Miura,K., Araki,M. and Yamamura,K. TITLE Exchangeable gene trap using the Cre/mutated lox system JOURNAL Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999) PUBMED 10512203 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC154437.2. On Jan 26, 2022 this sequence version replaced NM_001168248.1. Transcript Variant: This variant (1) represents the longest transcript. Both variants 1 and 2 encode the same protein. ##Evidence-Data-START## CDS exon combination :: SRR10662772.506465.1, SRR11927937.5699866.1 [ECO:0000331] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-224 AC154437.2 143779-144002 225-309 AC154437.2 145784-145868 310-398 AC154437.2 148215-148303 399-3637 AC154437.2 149123-152361 FEATURES Location/Qualifiers source 1..3637 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="13" /map="13 31.05 cM" gene 1..3637 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="RecQ mediated genome instability 1" /db_xref="GeneID:74386" /db_xref="MGI:MGI:1921636" exon 1..224 /gene="Rmi1" /gene_synonym="4932432N11Rik" /inference="alignment:Splign:2.1.0" exon 225..309 /gene="Rmi1" /gene_synonym="4932432N11Rik" /inference="alignment:Splign:2.1.0" exon 310..398 /gene="Rmi1" /gene_synonym="4932432N11Rik" /inference="alignment:Splign:2.1.0" misc_feature 347..349 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="upstream in-frame stop codon" exon 399..3637 /gene="Rmi1" /gene_synonym="4932432N11Rik" /inference="alignment:Splign:2.1.0" CDS 428..2278 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="RMI1, RecQ mediated genome instability 1, homolog" /codon_start=1 /product="recQ-mediated genome instability protein 1" /protein_id="NP_001161720.1" /db_xref="CCDS:CCDS26571.1" /db_xref="GeneID:74386" /db_xref="MGI:MGI:1921636" /translation="
MSVASAVLRVETWLLATWHVKVPPMWLEACVNWIQEENNNATLSQAQINKQVLEQWLLTDLRDLEHPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVSAETQSTPKPWEVRPSRMLMLQLTDGVTHIQGMEYQSIPALHSGLPPGTKILVRGCILFRLGVLLLKPENVKVLGGEVDGLSEENAQEKVLARLIGELDPTVPVIPNNSIHNVPKVSGGLDAVLGPSDEELLASLDESEESAANNDVAMERSCFSTGTSSNTTPTNPSGFEPGCNISSRPKEKPPNQPTHFTDGEFDDFSLEEALLLEETVQKEQMETKASQPLTLKENTGKCMEIFSHKPSSLNHTALIHKQGNSNFDEKTSEQMIHEDKFFDCASTRNHHKRFSAHDFTNDSKISEVDDAAQQTLSSSNVHCLRNKILNRKLDLSEKSSQISKENGHPFQACSSRSFENNTYLSIGMDLHSPPFIYLSVLMARKPKEVTTVTVKAFIVTLTGNLSSSGGFWGVTAKVSDGTAYLDVDFIDEILTSMIGYSVPEMKQLRKDPLKYKTFLEGLQKCQRDLIDLCCLMTISYDPSSCKGVVLELQDVGMEHVENLKKRLNK"
misc_feature 428..430 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="N-acetylmethionine. /evidence=ECO:0000250|UniProtKB:Q9H9A7; propagated from UniProtKB/Swiss-Prot (Q9D4G9.1); acetylation site" misc_feature 467..1039 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="RecQ mediated genome instability protein; Region: RMI1_N; pfam08585" /db_xref="CDD:462527" misc_feature 1100..1102 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9H9A7; propagated from UniProtKB/Swiss-Prot (Q9D4G9.1); phosphorylation site" misc_feature 1232..1360 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="propagated from UniProtKB/Swiss-Prot (Q9D4G9.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1304..1306 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9H9A7; propagated from UniProtKB/Swiss-Prot (Q9D4G9.1); phosphorylation site" misc_feature 1865..2257 /gene="Rmi1" /gene_synonym="4932432N11Rik" /note="Recq-mediated genome instability protein 1, C-terminal OB-fold; Region: RMI1_C; pfam16099" /db_xref="CDD:465021" ORIGIN
gctgctcacgtgtgccgggaggggcgactgcggggggattttcgagccccgagggagtttggcgcgattggaggagggacggtcgccccgtgagcgcccgattgggcgggaagaagtgaaagagggaaaagagaacccagctgggaacgggagagggagagcggcgcgcggccctgggatcacgctgcggtgcgaggcgaggcgaggcgaggcgggaaggccagctgggaagcagagatgtgaatctgtgagttctaggtcagccagagctacatagtcaaactgtctcaagaaacaaacaaaactaagggtcatttctctgcagaggaggctctgagtactgtactgaccatctagcttgaaatccctcgttagctcacaggctggcctgctaagtggtagatgtggatcctcttacttaaaagaaatgagtgtagctagtgctgtattaagagttgaaacctggcttttggcaacatggcatgttaaggtacctccaatgtggctggaagcttgtgttaactggatccaagaagaaaataataatgctactttgagtcaggcacaaataaataaacaagtgttggagcaatggcttcttactgacctgagagacttggaacatcctctcttacctgatgacattttagaactgccaaagggagaactgaatgggttttatgctctacagatcaattctttggttgatgtgagtcagcctgcttattcacagatacagaagctgagaggaaagaatacaaccaatgatctcgtctcagctgaaacgcagagtactccaaaaccatgggaagtgaggccttctcggatgctgatgctacagctcactgatggtgtcacacacattcagggaatggagtatcagtctatcccagctctccatagtggtcttcctccaggtacaaaaattttagttcgtggatgcattttgttccgtcttggtgttctcttactgaaaccagaaaatgtgaaggtgctagggggtgaggtagatggtctttcagaagaaaatgcccaagaaaaagtacttgcaagattaattggggaacttgatcctacagttccagtcattccaaataattccattcacaacgtgcccaaagtttcagggggcttagatgctgttttggggccctcggatgaagaactcttggcaagtcttgatgaaagtgaagagtctgcagcaaataatgacgtggctatggaaagaagctgtttcagcacaggcacttcctcaaatactactccgacaaatccgtctggttttgagccaggatgtaacatttcttcaaggccaaaggagaaaccaccaaaccagcccacgcatttcactgatggagaatttgatgacttttcactggaagaggccttgcttttggaagagactgtccagaaagaacagatggaaacaaaagcatcgcagccactaactttgaaggaaaacactggtaaatgtatggagattttttcacataaacctagtagtctgaaccacacagctttgattcataaacaaggaaacagcaattttgatgaaaaaacatctgaacaaatgattcatgaagacaaattttttgattgtgcatctactagaaaccatcataagagattctcagctcatgattttacaaatgacagtaagatttcagaagtagatgatgcagcacaacagaccctcagcagttcaaatgtacattgcttacgtaataaaatattaaacagaaagctggacctatcagaaaagagttcacaaatttctaaagaaaatggccaccctttccaggcttgttcttcaagatcatttgagaataatacttatctatctattggcatggacttacattctccaccctttatctatttgtctgttctaatggccagaaagccaaaggaagttactactgtgacagtcaaagcgtttattgtcactttaactggaaatctctcaagttctggtggcttttggggtgtaactgcaaaagtttctgatggtactgcatatctagatgtagattttatagacgaaatacttaccagtatgatagggtattcagtaccagaaatgaaacaattaagaaaggaccctcttaaatataaaacattcctagaagggttacagaaatgtcagcgagatctgatcgatttgtgttgcctgatgactatttcatacgatccttcttcatgtaaaggggtggtgctggaattgcaagatgttggtatggaacacgtggagaacctaaagaaacggttgaataaataatttgccagaatgctattggagcacactttaaaacaggcaaatatttggaatcaaatttgtgtattctcagttttggaattctgtaagaaaaagcttcagagcttaaagctggggcagctccgcggttgacagacacagtgtctgccaagtgtggtaactggagtttaaccatctggtctctcgaggcaaaaggcgagaccctgcttccagaatccgttggtagtcctctacacaggtggcagaggacacacacacacacacacgtactaaataaatgacatttaaaaataaagatatttaatcaaaatatgtgaaagaatgtttatattttggtgatactggcccagagtcttgtaatgctagcaagtttctaccatagttacatctctagatccttgggatgtttgtttgttttgtttatttttttgttttccctccctggaaactggatctcatacacaggctgtcctcaaactctcttgtatagctgagagtgacctcgagtttctggtctcttgccttcaccacccaagtgctagatttagggttgtacatttttacctgtgcgtgctaggcaaatgctctaccaactgagccatatccccagtccttgttgaagggtttagctgacccactctggctgagaaacttgttttccacttgtcattggataaacctaaaattgataaagaatagtgatggactgacagcagtttgttgggtaaaggtgcttgctgctgagcctgacaacctgatgctattcctggtaccacatgctggaaagcgaaaactctcccacaagatggcctctgatttccacctgcatgccaaaacgtgtgtgctccctcccatacataaaggtacacacaatgaaataaaatttaataaagagttgatgttccccagtgagatattactgaaagttaggaattgaaaattagtaattttacctctaataagttgaatattaaaaaaaattgtactgtgatttagatatcttccatttactgtgtgtataggtcagagggcagcctgggacacttggctttctcctgctgtgtggattcatggggtaaaatcctcaggctctgcacgcaccttgtacctgctgagctgtgaggatggctctggcttttgagatagtatcctgatacgtttccaggatcctgcgaattggctttgcatatgagttatttgtgttattgttttaaagagactagactatttccttttgctgtactagattatgtttgggagatgtacttttaaaattgtaaaagtgtgtgtgtgtgtagagattgatgaatggaatgaacctctgaacctgtaagccatccccaattaaatgtccttagaaga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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