2024-09-29 09:39:04, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001097980 1081 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus claudin 34B1 (Cldn34b1), mRNA. ACCESSION NM_001097980 XM_001475498 VERSION NM_001097980.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1081) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX005164.9. On Feb 7, 2008 this sequence version replaced XM_001475498.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology RefSeq Select criteria :: based on expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-137 BX005164.9 135984-136120 c 138-1081 BX005164.9 132656-133599 c FEATURES Location/Qualifiers source 1..1081 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /chromosome="X" /map="X 72.38 cM" gene 1..1081 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /note="claudin 34B1" /db_xref="GeneID:100040937" /db_xref="MGI:MGI:3648403" exon 1..137 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /inference="alignment:Splign:2.1.0" misc_feature 85..87 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /note="upstream in-frame stop codon" exon 138..1081 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /inference="alignment:Splign:2.1.0" CDS 163..792 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /codon_start=1 /product="uncharacterized protein LOC100040937 precursor" /protein_id="NP_001091449.1" /db_xref="CCDS:CCDS53231.1" /db_xref="GeneID:100040937" /db_xref="MGI:MGI:3648403" /translation="
MPLKKCHGQMGGFALTTVAWLLCCISTGLPQWQVWHYEDPVVLKPTVALVGMWRACVFHTDRNSSNTRVCYQYNYDGSIPLYIRGNQHLLLVSSFLGLFGKITTIIALSNVHMGRVRRNATCNPFRLSGILNIIASSFLYLAVLFNYIAIMSKWGIAFPPSFNLPFQPDTRKMGSAMALAIIAAVLFQLSGTICLSSNLDIGKMPRSKM"
sig_peptide 163..252 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 214..750 /gene="Cldn34b1" /gene_synonym="EG546400; Gm16390" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
agaggtggtggtgaagctagcaaggagtctcaaagtcctagtgagaggaccaatttccttgtcgactctactgcctcgcataactgactgccaagcaacatcatctactatcagttcacttgtgaattgtgtctctgttctcaagtattcactgccgtcatcatgccgttgaaaaagtgccatggccaaatgggaggttttgctttgaccactgtggcctggctactttgctgcatatccacaggccttcctcagtggcaagtgtggcactatgaagatcctgtggtcctcaagcctacagtggctttagtgggcatgtggagagcctgcgttttccacaccgacagaaactccagcaacaccagagtatgttaccaatacaactacgatggctccattcctttgtatattcggggaaaccagcacttgctgctggtttctagctttcttgggctttttgggaaaatcaccaccattattgctctttcgaatgtgcatatgggaagagtacggaggaatgccacctgcaatcctttcagactttcaggcatactgaacatcattgctagcagctttctttaccttgctgttttgttcaattacatagccatcatgagcaaatgggggattgccttcccaccatctttcaatttgcctttccagccagacactcggaagatgggaagtgccatggctttggcaattatagctgcagttttatttcaactaagtggcacaatttgcctttcttcaaatttagacataggcaagatgccccgatccaaaatgtaaatcgctaccttacatagccttgaaatgccagcaaagataatgagtattcttcacatgtctacacaaattttcaaagaacttgaaaggatgccaattgtggcctgcggggaaaaaataatccagttgactttctcttatcttttttttttggcttcttttgtgtttccttaatgcattatttggattgtgggcttttattaaataaaatattattttatgggtagtattgatttatgttctacttgctgtcaacagtagcaaataatcaataaacctgatccatattcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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