2024-09-28 09:23:44, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001082547 414 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus cystatin domain containing 4 (Cstdc4), mRNA. ACCESSION NM_001082547 XM_484543 XM_915346 XM_993634 VERSION NM_001082547.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 414) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB843120.1 and AC154188.2. On or before Mar 10, 2007 this sequence version replaced XM_484543.3, XM_915346.2, XM_993634.1. ##Evidence-Data-START## Transcript exon combination :: BY768199.1, BB736133.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164135 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-365 BB843120.1 1-365 366-414 AC154188.2 92281-92329 FEATURES Location/Qualifiers source 1..414 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="16" /map="16 25.43 cM" gene 1..414 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /note="cystatin domain containing 4" /db_xref="GeneID:433016" /db_xref="MGI:MGI:3645124" exon 1..114 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /inference="alignment:Splign:2.1.0" misc_feature 13..15 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /note="upstream in-frame stop codon" CDS 49..342 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /codon_start=1 /product="EG433016 protein" /protein_id="NP_001076016.1" /db_xref="CCDS:CCDS37328.1" /db_xref="GeneID:433016" /db_xref="MGI:MGI:3645124" /translation="
MMPGGLSRARSATPEIQEIADKVKSLLEEKTNEKYEVFKAVEYKSQVVAGQNYFIKMDVGGGCFLHIKVFKGISGENVLELHGYQTNKTRKDELSYF"
misc_feature 58..318 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /note="Cystatin domain; Region: Cystatin; pfam00031" /db_xref="CDD:425431" misc_feature order(184..192,196..198) /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /note="putative proteinase inhibition site [active]" /db_xref="CDD:238002" exon 115..216 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /inference="alignment:Splign:2.1.0" exon 217..414 /gene="Cstdc4" /gene_synonym="EG433016; Gm5483" /inference="alignment:Splign:2.1.0" ORIGIN
gatcatttcttctaagtgtcctatcgagcaaagaagcaactcatcagaatgatgcctggaggcttgtcacgggccagatctgccacaccagaaatccaggagattgctgataaggttaagtcactgcttgaagagaaaaccaatgagaaatatgaagtgttcaaagctgttgagtataaatctcaagtcgtcgctggacaaaattacttcattaagatggatgttggtggtggttgtttcctccacataaaggtcttcaaagggatttctggagaaaatgttttagaacttcatggttaccagactaacaaaaccaggaaagacgagctgtcctacttctaagcagcaaattctaaagtgacctgattcttcttgtaaacaaatttagccttcaataaagaaatattcttgaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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