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Previous release (v1)
2025-09-19 21:40:00, GGRNA : RefSeq release 231 (Jul, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
colipase preproprotein" /codon_start=1 /product="colipase isoform 1 preproprotein" /protein_id="NP_001823.1" /db_xref="CCDS:CCDS4811.1" /db_xref="GeneID:1208" /db_xref="HGNC:HGNC:2085" /db_xref="MIM:120105" /translation="MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ" sig_peptide 36..86 /gene="CLPS" /inference="COORDINATES: ab initio prediction:SignalP:4.0" proprotein 87..371 /gene="CLPS" /product="colipase isoform 1 proprotein" misc_feature 87..371 /gene="CLPS" /note="Colipase; Region: COLIPASE; smart00023" /db_xref="CDD...
AA_position 78
note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="SLX1A-like isoform 2" /protein_id="NP_001408593.1" /db_xref="GeneID:130134321" /translation="MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET" misc_feature 299..508 /gene="LOC130134321" /note="Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its eukaryotic homologs; Region: GIY-YIG_SLX1; cd10455" /db_xref="CDD:198402" misc_feature order(305..313,353..361) /gene="...
AA_position 121
map="15" gene 1..594 /gene="LOC124907508" /note="double homeobox protein 1-like" /db_xref="GeneID:124907508" CDS 1..594 /gene="LOC124907508" /codon_start=1 /product="double homeobox protein 1-like" /protein_id="NP_001408938.1" /db_xref="GeneID:124907508" /translation="MPAEVHGSPRASLCPCPSVKFRPGLPAMALLTALDDTLPEEAQGPGRRMILLSTPSQSDALRACFERNLYPGIATKEQLAQGIDIPEPRVQIWFQNERSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGSQTALLLRAFEKDRFPGIAAREELARETGFPESRIQIWFQNRRARHRGQSGRAPTQASIRCNAAPIG" misc_feature 160..294 /gene="LOC124907508" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 364..531 /gene...
AA_position 14
and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:124906621" CDS 1..918 /gene="LOC124906621" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_047300967.1" /db_xref="GeneID:124906621" /translation="MLKSWTSAAQNGTFRGHRTVADTVRLVKEAPCCSRSLMRPCPCDRKDKLQHTESSKQQCPCDGEDRLRHTESSKQQCPCDGEDRLRHTESSKQQCPCDGEDRLRHTESSKQQCPCDGEDRLRHTESSKQQCPCDGEDRLRHTESSKHPCPCDGEDRLRHAEGSRLRGSEAGGKRCVCGPRAAGNAEAGSQEGSVSPSRPCRHLQARSPNPACETAGIHCFKPIRLESFVLAAPKASHSSALSTGSVSAGKVGRPHRGTAAGPCKTQGGRASMSEGRRQMPQGITSCMLHLDGKTQKPLPTAGSAD" ORIGIN //...
AA_position 41
receptor; soluble CD320" /codon_start=1 /product="CD320 antigen isoform 2 precursor" /protein_id="NP_001159367.1" /db_xref="CCDS:CCDS54210.1" /db_xref="GeneID:51293" /db_xref="HGNC:HGNC:16692" /db_xref="MIM:606475" /translation="MSGGWMAQVGAWRTGALGLAGLGLGLEAAASPLSTPTSAQAAGIEPCTQKGQCPPPPGLPCPCTGVSDCSGGTDKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATTMGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSASLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP" sig_peptide 69..158 /gene="CD320" /gene_synonym="8D6; 8D6A; sCD320; TCBLR; TCII-R; TCN2R" /inference="COORDINATES: ab initio...
AA_position 66
id="NP_001408589.1" /db_xref="GeneID:130134321" /translation="MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET" misc_feature 299..529 /gene="LOC130134321" /note="Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its eukaryotic homologs; Region: GIY-YIG_SLX1; cd10455" /db_xref="CDD:198402" misc_feature order(305..313,353..361) /gene="...
AA_position 235
start=1 /product="CD320 antigen isoform 1 precursor" /protein_id="NP_057663.1" /db_xref="CCDS:CCDS12198.1" /db_xref="GeneID:51293" /db_xref="HGNC:HGNC:16692" /db_xref="MIM:606475" /translation="MSGGWMAQVGAWRTGALGLAGLGLGLEAAASPLSTPTSAQAAGPSSGSCPPTKFQCRTSGLCVPLTWRCDRDLDCSDGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGTDKKLRNCSRLACLAGELRCTLSDDCIPLTWRCDGHPDCPDSSDELGCGTNEILPEGDATTMGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAVLSASLVTATLLLLSWLRAQERLRPLGLLVAMKESLLLSEQKTSLP" sig_peptide 69..158 /gene="CD320" /gene_synonym="8D6; 8D6A; sCD320; TCBLR; TCII-R; TCN2R" /inference="COORDINATES: ab initio...
AA_position 108
LLFWGFPALFPESPCWLLATGQVARARKILWRFAEASGVGPGDSSLEENSLATELTMLSARSPQPRYHSPLGLLRTRVTWRNGLILGFSSLVGGGIRASFRRSLAPQVPTFYLPYFLEAGLEAAALVFLLLTADCCGRRPVLLLGTMVTGLASLLLLAGAQCELGAPQAIQEPLCLGRRSATPGGHSADRGAAWGGSPRPAAVCFPLILVEGPKGSFVTGLKSARLDCAVPLCPGAPGLPGCVRTQQPLRGRGLPHGDQGGRAGPGAGGRVPGPGSRPPGHPARPAGLLPATSRLRLPCCPCPAVCPAAA" misc_feature 1278 /gene="SLC22A31" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature 1062 /gene="SLC22A31" /note="cation transport protein; Region: 2A0119; TIGR00898" /db_xref="CDD:273328" variation 718 /gene="SLC22A31" /replace="a" /replace="...
AA_position 338
db_xref="CCDS:CCDS91484.1" /db_xref="GeneID:51524" /db_xref="HGNC:HGNC:26944" /db_xref="MIM:614459" /translation="MLQTSNYSLVLSLQFLLLSYDLFVNSFSELLQKTPVIQLVLFIIQDIAVLFNIIIIFLMFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSISLHVWVMNLRWKNSNSFIWTDGLQMLFVFQRLGKDQSKVRPLSGPTCVSFSEGLDAGFPDLSQLAWDGCDSHTRNRRDYCPCPC" misc_feature 202..204 /gene="TMEM138" /gene_synonym="HSPC196" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9NPI0.1); glycosylation site" misc_feature 205..267 /gene="TMEM138" /gene_synonym="HSPC196" /note="propagated from UniProtKB/Swiss-Prot...
AA_position 173
variation 3113 /gene="LOC124904103" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:7222517" CDS 3114..4439 /gene="LOC124904103" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_047293220.1" /db_xref="GeneID:124904103" /translation="MSPAGGWVSMSSDLRRGRCHRQQVWCPCPQISEGDDVTGRWFGVHVLRSQKGTMSPAAGWVSMSSDLRRRRCHRQVVGYPCPQISEGDDVTGRWLGVHVLRSQKETMSPAGGLVSISSDLRRRRCHRQVAGYQCPQISEGDDVTGRWLGVHVLRSQKETMSPAGGLVSMSSDLRRRRCHRQVVGCPCPQISEEDDVTGRWLGIHVLRSQKGTMSLAGGLVFMSSDLRRRQCHQQVVWCPCPQISEGDNVTGRWLDIHVLRSQKGTISPAGGWVFMSSDLRRRRCHRQVVWCPCPQISEGDDVTGRWLGIHVLRSQKGTMSLAGGLVFMSSDLRRRQCHRQISE...
AA_position 26
protein 2; diphthamide biosynthesis protein 3" /codon_start=1 /product="diphthamide biosynthesis protein 3 isoform 2" /protein_id="NP_001040899.1" /db_xref="CCDS:CCDS43058.1" /db_xref="GeneID:285381" /db_xref="HGNC:HGNC:27717" /db_xref="MIM:608959" /translation="MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKDQFVCGETVPAPSANKELVKC" misc_feature 83..>202 /gene="DPH3" /gene_synonym="DELGIP; DELGIP1; DESR1; DPH3A; KTI11; ZCSL2" /note="CSL zinc finger; Region: zf-CSL; pfam05207" /db_xref="CDD:398744" variation 68 /gene="DPH3" /gene_synonym="DELGIP; DELGIP1; DESR1; DPH3A; KTI11; ZCSL2" /replace="a" /replace="g...
AA_position 26
coiled-coil domain-containing protein 188" /protein_id="NP_001352821.1" /db_xref="CCDS:CCDS93123.1" /db_xref="GeneID:388849" /db_xref="HGNC:HGNC:51899" /translation="MEGLKTLGPCGHPHPQCPPTPASSSHGGGLDQPCQGFVGWPCLGPISSAHSVQSQRPFPVPGAGGSGPTVEGEAPGLFLSSQEQRARDTEGPRQGDLEAGLGWGWPLHPGSNQGAPRQGGSIGSGTRPCPCPPLSREGGALASPRVALSQLQCGLLGSAEQSFLQLEQENHSLKRQNQELREQLGALLGPGQQFLPLCPEHSSCTALAWPPDPAGTQPLGNRAPLQLLRRELCQGQEAFVQQSQNELQQIRLCFERKKMVITEVWDNVAEMHMALNNQATGLLNLKKDIRGVLDQMEDIQLEILRERAQCRTRARKEKQMASMSKGRPKLGSSKGLAGQLWLLTLRLLLGALLVWTAAYVYVVNPTPFEGLVPPLLSRATVWKLRALLDPFLRLKVDGFLPF" misc_feature 70..159 /gene="...
AA_position 129
gene="MT4" /gene_synonym="MT-4; MT-IV; MTIV" /note="metallothionein-IV" /codon_start=1 /product="metallothionein-4" /protein_id="NP_116324.2" /db_xref="CCDS:CCDS42165.1" /db_xref="GeneID:84560" /db_xref="HGNC:HGNC:18705" /db_xref="MIM:606206" /translation="MDPRECVCMSGGICMCGDNCKCTTCNCKTYWKSCCPCCPPGCAKCARGCICKGGSDKCSCCP" misc_feature 57..239 /gene="MT4" /gene_synonym="MT-4; MT-IV; MTIV" /note="Metallothionein; Region: Metallothio; pfam00131" /db_xref="CDD:395080" variation 57 /gene="MT4" /gene_synonym="MT-4; MT-IV; MTIV" /replace="a" /replace="g" /db_xref="dbSNP:768016689" variation 58 /gene="...
AA_position 35
GIFB; GRIF; ZnMT3" /note="metallothionein 3 (growth inhibitory factor (neurotrophic)); metallothionein-III" /codon_start=1 /product="metallothionein-3" /protein_id="NP_005945.1" /db_xref="CCDS:CCDS10762.1" /db_xref="GeneID:4504" /db_xref="HGNC:HGNC:7408" /db_xref="MIM:139255" /translation="MDPETCPCPSGGSCTCADSCKCEGCKCTSCKKSCCSCCPAECEKCAKDCVCKGGEAAEAEAEKCSCCQ" misc_feature 64..267 /gene="MT3" /gene_synonym="GIF; GIFB; GRIF; ZnMT3" /note="Metallothionein; Region: Metallothio; pfam00131" /db_xref="CDD:395080" misc_feature 64..153 /gene="MT3" /gene_synonym="GIF; GIFB; GRIF; ZnMT3" /note="propagated...
AA_position 6
pancreatic colipase preproprotein; colipase, pancreatic" /codon_start=1 /product="colipase isoform 3 preproprotein" /protein_id="NP_001239527.1" /db_xref="CCDS:CCDS75438.1" /db_xref="GeneID:1208" /db_xref="HGNC:HGNC:2085" /db_xref="MIM:120105" /translation="MEKILILLLVALSVAYAAPGPRGIIINLTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ" sig_peptide 36..86 /gene="CLPS" /inference="COORDINATES: ab initio prediction:SignalP:6.0" proprotein 87..248 /gene="CLPS" /product="colipase isoform 3 proprotein" misc_feature 87..248 /gene="CLPS" /note="Colipase; a stoichiometric cofactor for pancreatic lipase,...
AA_position 37
is encoded by transcript variant 9; zinc finger protein KOX24" /codon_start=1 /product="zinc finger protein 28 isoform 9" /protein_id="NP_001356697.1" /db_xref="GeneID:7576" /db_xref="HGNC:HGNC:13073" /db_xref="MIM:620466" /translation="MALPQGLLTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLGEDNLLGMCPCVSLYFLLLPLGSHILT" misc_feature 143..>265 /gene="ZNF28" /gene_synonym="KOX24" /note="krueppel associated box; Region: KRAB; smart00349" /db_xref="CDD:214630" variation 125 /gene="ZNF28" /gene_synonym="KOX24" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:2063148297" variation 129 /gene="ZNF28" /...
AA_position 56
CDS 32..265 /gene="C16orf87" /note="isoform 3 is encoded by transcript variant 3; UPF0547 protein C16orf87" /codon_start=1 /product="UPF0547 protein C16orf87 isoform 3" /protein_id="NP_001335590.1" /db_xref="GeneID:388272" /db_xref="HGNC:HGNC:33754" /translation="MSATRAKKVKMATKSCPECDQQVPVACKSCPCGYIFISRKLLNAKHSEKSPPSTGSQKICYQYCLSQEAPTSYLLPK" misc_feature 71..145 /gene="C16orf87" /note="Uncharacterized protein family UPF0547; Region: UPF0547; pfam10571" /db_xref="CDD:402278" variation 32 /gene="C16orf87" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1318211547" variation...
AA_position 30
containing protein 2; diphthamide biosynthesis protein 3" /codon_start=1 /product="diphthamide biosynthesis protein 3 isoform 1" /protein_id="NP_996662.1" /db_xref="CCDS:CCDS2629.1" /db_xref="GeneID:285381" /db_xref="HGNC:HGNC:27717" /db_xref="MIM:608959" /translation="MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFVCGETVPAPSANKELVKC" misc_feature 83..247 /gene="DPH3" /gene_synonym="DELGIP; DELGIP1; DESR1; DPH3A; KTI11; ZCSL2" /note="CSL zinc finger; Region: zf-CSL; pfam05207" /db_xref="CDD:398744" variation 68 /gene="DPH3" /gene_synonym="DELGIP; DELGIP1; DESR1; DPH3A; KTI11;...
AA_position 26
KRTAP28-5" /note="keratin associated protein 28-5" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 5" /protein_id="NP_001382335.1" /db_xref="CCDS:CCDS92956.1" /db_xref="GeneID:112441437" /db_xref="HGNC:HGNC:34224" /translation="MGCCGCGGCGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCCSCGCGCGKGCCQQKGCCQKQCCC" misc_feature 10..207 /gene="SCYGR5" /gene_synonym="KRTAP28-5" /note="propagated from UniProtKB/Swiss-Prot (A0A286YF46.1); Region: 10 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..258 /gene="SCYGR5" /gene_synonym="KRTAP28-5" /inference="alignment:...
AA_position 38
KRTAP28-1" /note="keratin associated protein 28-1" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 1" /protein_id="NP_001382331.1" /db_xref="CCDS:CCDS92952.1" /db_xref="GeneID:112441428" /db_xref="HGNC:HGNC:34218" /translation="MGCCGCGGCGGCGGCGGGCGGGCGRCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCSSCGYSCGKGCCQQKCCCQKQCCC" misc_feature 10..216 /gene="SCYGR1" /gene_synonym="KRTAP28-1" /note="propagated from UniProtKB/Swiss-Prot (A0A286YEY9.1); Region: 10 X 2 AA repeats of CG" exon 1..267 /gene="SCYGR1" /gene_synonym="KRTAP28-1" /inference="alignment:Splign:2.1.0"...
AA_position 41
codon_start=1 /product="WD repeat-containing protein 72 isoform b" /protein_id="NP_001264105.1" /db_xref="CCDS:CCDS73730.1" /db_xref="GeneID:256764" /db_xref="HGNC:HGNC:26790" /db_xref="MIM:613214" /translation="MAGVPPPAWLPPCSLISDCCASNQRDSVGVGPSEPAPVSPVKHDSNSNSANFQDVEDMPDRCALEESESPGEPRHHSWIAKVCPCKVS" variation 24..25 /gene="WDR72" /gene_synonym="AI2A3" /replace="" /replace="at" /db_xref="dbSNP:1893095803" variation 24 /gene="WDR72" /gene_synonym="AI2A3" /replace="a" /replace="g" /db_xref="dbSNP:1394115002" variation 26 /gene="WDR72" /gene_synonym="AI2A3" /replace="c" /replace="g" /db_xref="...
AA_position 83
factor 1; chemokine (C-X-C motif) ligand 12" /codon_start=1 /product="stromal cell-derived factor 1 isoform alpha precursor" /protein_id="NP_954637.1" /db_xref="CCDS:CCDS7207.1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK" sig_peptide 93..155 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 156..359 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /product...
AA_position 30
gene protein" /codon_start=1 /product="RING-box protein 2 isoform 3" /protein_id="NP_899060.1" /db_xref="CCDS:CCDS43158.1" /db_xref="GeneID:9616" /db_xref="HGNC:HGNC:10070" /db_xref="MIM:603863" /translation="MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVLDVKLKTNKRTVLWSGENVIIPSTTAACPCG" misc_feature 126..>209 /gene="RNF7" /gene_synonym="CKBBP1; rbx2; ROC2; SAG" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" variation 45 /gene="RNF7" /gene_synonym="CKBBP1; rbx2; ROC2; SAG" /replace="a" /replace...
AA_position 87
domain-containing protein 3; harakiri, BCL2 interacting protein (contains only BH3 domain)" /codon_start=1 /product="activator of apoptosis harakiri" /protein_id="NP_003797.1" /db_xref="CCDS:CCDS9181.1" /db_xref="GeneID:8739" /db_xref="HGNC:HGNC:5185" /db_xref="MIM:603447" /translation="MCPCPLHRGRGPPAVCACSAGRLGLRSSAAQLTAARLKALGDELHQRTMWRRRARSRRAPAPGALPTYWPWLCAAAQVAALAAWLLGRRNL" misc_feature 135..407 /gene="HRK" /gene_synonym="DP5; HARAKIRI" /note="Activator of apoptosis harakiri; Region: Harakiri; pfam15196" /db_xref="CDD:259330" misc_feature 231..275 /gene="HRK" /gene_synonym="DP5; HARAKIRI...
AA_position 2
factor 1; chemokine (C-X-C motif) ligand 12" /codon_start=1 /product="stromal cell-derived factor 1 isoform beta precursor" /protein_id="NP_000600.1" /db_xref="CCDS:CCDS44373.1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM" sig_peptide 93..155 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 156..371 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /...
AA_position 30
note="isoform 2 is encoded by transcript variant 2; UPF0547 protein C16orf87" /codon_start=1 /product="UPF0547 protein C16orf87 isoform 2" /protein_id="NP_001335589.1" /db_xref="CCDS:CCDS86522.1" /db_xref="GeneID:388272" /db_xref="HGNC:HGNC:33754" /translation="MSATRAKKVKMATKSCPECDQQVPVACKSCPCGYIFISRKLLNAKHSEKSPPSTEKQEKEIDIYANLSDEKAFVFSVALAEINRKIINQRLIL" misc_feature 71..145 /gene="C16orf87" /note="Uncharacterized protein family UPF0547; Region: UPF0547; pfam10571" /db_xref="CDD:402278" variation 32 /gene="C16orf87" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP...
AA_position 30
note="keratin associated protein 28-7" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 7" /protein_id="NP_001382337.1" /db_xref="CCDS:CCDS92959.1" /db_xref="GeneID:112441438" /db_xref="HGNC:HGNC:34226" /translation="MGCCGCGSCGGCGGGCGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCGSCGCGCGKGCCQQKGCCQKQCCC" misc_feature 10..240 /gene="SCYGR7" /gene_synonym="KRTAP28-7" /note="propagated from UniProtKB/Swiss-Prot (A0A286YF01.1); Region: 14 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..291 /gene="SCYGR7" /gene_synonym="KRTAP28-7" /inference="alignment:...
AA_position 49
diacylglycerol pyrophosphate phosphatase-like 2" /codon_start=1 /product="phospholipid phosphatase 4 isoform d" /protein_id="NP_001305097.1" /db_xref="GeneID:196051" /db_xref="HGNC:HGNC:23531" /translation="MRELAIEIGVRALLFGVFVFTEFLDPFQRVIQPEEIWLYKNPLVQSDNIPTRLMFLPFRALASRRSTWRASCTASPRVGGERAGGSVLPSCPCTAP" misc_feature 89..151 /gene="PLPP4" /gene_synonym="DPPL2; PPAPDC1; PPAPDC1A" /note="propagated from UniProtKB/Swiss-Prot (Q5VZY2.2); transmembrane region" variation 80 /gene="PLPP4" /gene_synonym="DPPL2; PPAPDC1; PPAPDC1A" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP...
AA_position 91
colipase preproprotein; colipase, pancreatic" /codon_start=1 /product="colipase isoform 2" /protein_id="NP_001239526.1" /db_xref="CCDS:CCDS75437.1" /db_xref="GeneID:1208" /db_xref="HGNC:HGNC:2085" /db_xref="MIM:120105" /translation="MILLPQPPKKLGLQENGELCMNSAQCKSNCCQHSSALGLARCTSMASENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ" misc_feature 218..469 /gene="CLPS" /note="Colipase; Region: COLIPASE; smart00023" /db_xref="CDD:128339" variation 176 /gene="CLPS" /replace="a" /replace="g" /db_xref="dbSNP:1196329361" variation 177 /gene="CLPS" /replace="c" /replace="t" /db_xref="dbSNP:1768380420"...
AA_position 64
note="keratin associated protein 28-3" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 3" /protein_id="NP_001382333.1" /db_xref="CCDS:CCDS92954.1" /db_xref="GeneID:112441429" /db_xref="HGNC:HGNC:34222" /translation="MGCCGCGSCGGCGGGCGGCGGGCGGGCGGGCGGVCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCRSCGCGCRKGCCQQKCCCQKQCCC" misc_feature 10..246 /gene="SCYGR3" /gene_synonym="KRTAP28-3" /note="propagated from UniProtKB/Swiss-Prot (A0A286YF60.1); Region: 13 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..303 /gene="SCYGR3" /gene_synonym="KRTAP28-3" /inference="alignment...
AA_position 53
colipase-like protein 2" /codon_start=1 /product="colipase-like protein 2 isoform b precursor" /protein_id="NP_997292.2" /db_xref="CCDS:CCDS4810.2" /db_xref="GeneID:389383" /db_xref="HGNC:HGNC:21250" /translation="MAAALALVAGVLSGAVLPLWSALPQYKKKITDRCFHHSECYSGCCLMDLDSGGAFCAPRARITMICLPQTKGATNIICPCRMGLTCISKDLMCSRRCHMI" sig_peptide 22..84 /gene="CLPSL2" /gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045" /note="/evidence=ECO:0000269|PubMed:15340161; propagated from UniProtKB/Swiss-Prot (Q6UWE3.3)" mat_peptide 85..321 /gene="CLPSL2" /gene_synonym="AAAL3045; C6orf126; dJ510O8.5; UNQ3045" /product="...
AA_position 78
p53 up-regulated modulator of apoptosis; p53-upregulated modulator of apoptosis" /codon_start=1 /product="bcl-2-binding component 3 isoform 3" /protein_id="NP_001120714.1" /db_xref="CCDS:CCDS46128.1" /db_xref="GeneID:27113" /db_xref="HGNC:HGNC:17868" /db_xref="MIM:605854" /translation="MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFLCTM" variation 66 /gene="BBC3" /gene_synonym="JFY-1; JFY1; PUMA" /replace="a" /replace="g" /db_xref="dbSNP:781070988" variation 67 /gene="BBC3" /gene_synonym="JFY-1; JFY1; PUMA" /replace="c" /replace="g" /replace="t...
AA_position 11
factor 1; chemokine (C-X-C motif) ligand 12" /codon_start=1 /product="stromal cell-derived factor 1 isoform 5 precursor" /protein_id="NP_001264919.1" /db_xref="CCDS:CCDS60518.1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHYCTCLIRVSFHGATPLTQGSWVLYSLSCAGGETGLREPGPMVSPRVESHQEGRLGVPGPVNLGKA" sig_peptide 93..155 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 156..401 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF;...
AA_position 30
keratin associated protein 28-4" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 4" /protein_id="NP_001382334.1" /db_xref="CCDS:CCDS92955.1" /db_xref="GeneID:112441430" /db_xref="HGNC:HGNC:34223" /translation="MGCCGCGSCGGCGGRCGGGCGGGCSGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCGSCGCGYGKGCCQQKCCCQKQCCC" misc_feature 10..261 /gene="SCYGR4" /gene_synonym="KRTAP28-4" /note="propagated from UniProtKB/Swiss-Prot (A0A286YEV6.1); Region: 14 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..318 /gene="SCYGR4" /gene_synonym="KRTAP28-4" /inference="alignment:...
AA_position 58
note="keratin associated protein 28-6" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 6" /protein_id="NP_001382336.1" /db_xref="CCDS:CCDS92958.1" /db_xref="GeneID:112441431" /db_xref="HGNC:HGNC:34225" /translation="MGCCGCGGCGGGCGGCGGGCSGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCHSCGCGCGCGKGCCQQKGCCQQKGCCKKQCCC" misc_feature 10..249 /gene="SCYGR6" /gene_synonym="KRTAP28-6" /note="propagated from UniProtKB/Swiss-Prot (A0A286YF77.1); Region: 13 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..318 /gene="SCYGR6" /gene_synonym="KRTAP28-6" /inference="...
AA_position 50
endothelial growth factor" /codon_start=1 /product="prokineticin-1 precursor" /protein_id="NP_115790.1" /db_xref="CCDS:CCDS825.1" /db_xref="GeneID:84432" /db_xref="HGNC:HGNC:18454" /db_xref="MIM:606233" /translation="MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEECHPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF" misc_feature 69..359 /gene="PROK1" /gene_synonym="EGVEGF; PK1; PRK1" /note="Region: Prokineticin; pfam06607" /db_xref="CDD:148298" sig_peptide 69..125 /gene="PROK1" /gene_synonym="EGVEGF; PK1; PRK1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide...
AA_position 78
keratin associated protein 28 family pseudogene 2" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 10" /protein_id="NP_001383012.1" /db_xref="GeneID:112441436" /db_xref="HGNC:HGNC:34221" /translation="MGCCGCGGCGGRCSGGCGGGCGGGCGGGCGGGCGGGCGGDCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCRSCGCSCGKSCCQQKCCCQKQCCC" exon 1..321 /gene="SCYGR10" /gene_synonym="KRTAP28-10; KRTAP28p2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 321) AUTHORS Wu,D.D., Irwin,D.M. and Zhang,Y.P. TITLE Molecular evolution of the keratin associated protein gene family in...
AA_position 59
keratin associated protein 28-8" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 8" /protein_id="NP_001382338.1" /db_xref="CCDS:CCDS92960.1" /db_xref="GeneID:112441432" /db_xref="HGNC:HGNC:34227" /translation="MGCCGCGGCGGGCGGCSGGCGGGCGGGCGGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCSSCGCGYGKGCCQQKGCCQQKCCCQKQCCC" misc_feature 10..252 /gene="SCYGR8" /gene_synonym="KRTAP28-8" /note="propagated from UniProtKB/Swiss-Prot (A0A286YFG1.1); Region: 12 X 2 AA repeats of CG. /evidence=ECO:0000305" exon 1..327 /gene="SCYGR8" /gene_synonym="KRTAP28-8" /inference="...
AA_position 55
Bv8 homolog" /codon_start=1 /product="prokineticin-2 isoform b precursor" /protein_id="NP_068754.1" /db_xref="CCDS:CCDS2916.1" /db_xref="GeneID:60675" /db_xref="HGNC:HGNC:18455" /db_xref="MIM:607002" /translation="MRSLCCAPPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK" sig_peptide 97..177 /gene="PROK2" /gene_synonym="BV8; HH4; KAL4; MIT1; PK2" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 163..411 /gene="PROK2" /gene_synonym="BV8; HH4; KAL4; MIT1; PK2" /note="Region: Prokineticin; pfam06607" /db_xref="CDD:148298" mat_...
AA_position 86
db_xref="HGNC:HGNC:29635" /db_xref="MIM:612454" /translation="MVLSLTGLIAFSFLQATLALNPEDPNVCSHWESYAVTVQESYAHPFDQIYYTRCTDILNWFKCTRHRISYKTAYRRGLRTMYRRRSQCCPGYYESGDFCIPLCTEECVHGRCVSPDTCHCEPGWGGPDCSSGCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDC...
AA_position 232
shisa homolog 5" /codon_start=1 /product="protein shisa-5 isoform e" /protein_id="NP_001259012.1" /db_xref="GeneID:51246" /db_xref="HGNC:HGNC:30376" /db_xref="MIM:607290" /translation="MGFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGECPCQL" misc_feature <145..462 /gene="SHISA5" /gene_synonym="SCOTIN" /note="Wnt and FGF inhibitory regulator; Region: Shisa; pfam13908" /db_xref="CDD:464036" variation 145 /gene="SHISA5" /gene_synonym="SCOTIN" /replace="a" /replace="g" /db_xref="dbSNP:2530098195" variation 146 /gene="SHISA5" /gene_...
AA_position 114
factor 1; chemokine (C-X-C motif) ligand 12" /codon_start=1 /product="stromal cell-derived factor 1 isoform gamma precursor" /protein_id="NP_001029058.1" /db_xref="CCDS:CCDS31186.1" /db_xref="GeneID:6387" /db_xref="HGNC:HGNC:10672" /db_xref="MIM:600835" /translation="MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN" sig_peptide 93..155 /gene="CXCL12" /gene_synonym="IRH; PBSF; SCYB12; SDF1; TLSF; TPAR1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 156..449 /gene="CXCL12" /gene_synonym="IRH; PBSF;...
AA_position 30
ligand 17; 6-Cys CXCL17" /codon_start=1 /product="C-X-C motif chemokine 17 precursor" /protein_id="NP_940879.1" /db_xref="CCDS:CCDS12608.1" /db_xref="GeneID:284340" /db_xref="HGNC:HGNC:19232" /db_xref="MIM:611387" /translation="MKVLISSPLMLMSMVSSSLNPGVARGHRDRGQASRRWLQEGGQECECKDWFLRAPRRKFMTVSGLPKKQCPCDHFKGNVKKTRHQRHHRKPNKHSRACQQFLKQCQLRSFALPL" sig_peptide 115..177 /gene="CXCL17" /gene_synonym="Dcip1; DMC; UNQ473; VCC-1; VCC1" /note="/evidence=ECO:0000269|PubMed:15340161; propagated from UniProtKB/Swiss-Prot (Q6UXB2.1)" mat_peptide 178..471 /gene="CXCL17" /gene_synonym="Dcip1; DMC; UNQ473; VCC...
AA_position 75
protein 28-2" /codon_start=1 /product="small cysteine and glycine repeat-containing protein 2" /protein_id="NP_001382332.1" /db_xref="CCDS:CCDS92953.1" /db_xref="GeneID:112441435" /db_xref="HGNC:HGNC:34220" /translation="MGCCGCGGCGGCGGRCGGCGGGCGGGCGGGCGGGCGGGCGGGCGGGCGGGCGGSCGSCTTCRCYRVGCCSSCCPCCRGCCGGCCSTPVICCCRRTCHSCGCGCGKGCCQQKCCCQKQCCC" misc_feature 10..312 /gene="SCYGR2" /gene_synonym="KRTAP28-2" /note="propagated from UniProtKB/Swiss-Prot (A0A286YFB4.1); Region: 19 X 2 AA repeats of CG" exon 1..363 /gene="SCYGR2" /gene_synonym="KRTAP28-2" /inference="alignment:Splign:2.1.0" variation 2 /...
AA_position 73
laminin, alpha 4" /codon_start=1 /product="laminin subunit alpha-4 isoform 3 precursor" /protein_id="NP_001098679.1" /db_xref="CCDS:CCDS43492.1" /db_xref="GeneID:3910" /db_xref="HGNC:HGNC:6484" /db_xref="MIM:600133" /translation="MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL" sig_peptide 268..339 /gene="LAMA4" /gene_synonym="CMD1JJ; LAMA3; LAMA4*-1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 349..627 /gene="LAMA4" /gene_synonym="CMD1JJ; LAMA3; LAMA4*-1" /product="laminin subunit alpha-4...
AA_position 68
laminin, alpha 4" /codon_start=1 /product="laminin subunit alpha-4 isoform 3 precursor" /protein_id="NP_001098678.1" /db_xref="CCDS:CCDS43492.1" /db_xref="GeneID:3910" /db_xref="HGNC:HGNC:6484" /db_xref="MIM:600133" /translation="MALSSAWRSVLPLWLLWSAACSRAASGDDNAFPFDIEGSSAVGRQDPPETSEPRVALGRLPPAAEVQCPCHCHPAGAPAPPRAVPHSSFSLSPPLSSPQCLESFTWARSVRKLEIKSFPL" sig_peptide 251..322 /gene="LAMA4" /gene_synonym="CMD1JJ; LAMA3; LAMA4*-1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 332..610 /gene="LAMA4" /gene_synonym="CMD1JJ; LAMA3; LAMA4*-1" /product="laminin subunit alpha-4...
AA_position 68
CCDS3008.1" /db_xref="GeneID:286676" /db_xref="HGNC:HGNC:28741" /db_xref="MIM:609739" /translation="MAWPKLPAPWLLLCTWLPAGCLSLLVTVQHTERYVTLFASIILKCDYTTSAQLQDVVVTWRFKSFCKDPIFDYYSASYQAALSLGQDPSNDCNDNQREVRIVAQRRGQNEPVLGVDYRQRKITIQNRADLVINEVMWWDHGVYYCTIEAPGDTSGDPDKEVKLIVLHWLTVIFIILGAIGVCWCQCCPQYCCCYIRCPCCPAHCCCPEEDLSLPSSLPQMPMTQTTNQPPIANGVLEYLEKELRNLNLAQPLPPDLKGRFGHPCSMLSSLGSEVVERRIIHLPPLIRDLSSSRRTSDSLHQQWLTPIPSRPWDLREGRSHHHYPDFHQELQDRGPKSWALERRELDPSWSGRHRSSRLNGSPIHWSDRDSLSDVPSSSEARWRPSHPPFRSRCQERPRRPSPRESTQRHGRRRRHRSYSPPLPSGLSSWSSEEDKERQPQSWRAHRRGSHSPHWPEEKPPSYRSLDITPGKNSRKKGSVERRSEKDSSHSGRSVVI"...
AA_position 203
like protein 1" /codon_start=1 /product="colipase-like protein 1 isoform 1 precursor" /protein_id="NP_001010886.1" /db_xref="CCDS:CCDS43456.1" /db_xref="GeneID:340204" /db_xref="HGNC:HGNC:21251" /translation="MMLPQWLLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRACPCLRNLTCIYSKNEKWLSIAYGRCQKIGRQKLAKKMFF" sig_peptide 93..161 /gene="CLPSL1" /gene_synonym="C6orf127; dJ510O8.6; ESP32" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 159..422 /gene="CLPSL1" /gene_synonym="C6orf127; dJ510O8.6; ESP32" /note="Colipase; a stoichiometric cofactor for...
AA_position 83
codon_start=1 /product="zinc finger protein 787 isoform 2" /protein_id="NP_001338611.1" /db_xref="CCDS:CCDS86810.1" /db_xref="GeneID:126208" /db_xref="HGNC:HGNC:26998" /translation="MELREEAWSPGPLDSEDQQMASHENPGEQPEAFPADPAASHLTLASFASGWEETPLPCFPLLGPWDHPTLASPPALGLALLAVEGGLVLWLQVSFLLDDLGDPWGPPSLPDFLCPCPSSLGSTPVC" variation 135 /gene="ZNF787" /gene_synonym="TIP20" /replace="a" /replace="g" /db_xref="dbSNP:754120179" variation 136 /gene="ZNF787" /gene_synonym="TIP20" /replace="" /replace="t" /db_xref="dbSNP:2514528375" variation 141 /gene="ZNF787" /gene_synonym="TIP20" /replace="c" /replace="t" /db_...
AA_position 114
start=1 /product="prokineticin-2 isoform a precursor" /protein_id="NP_001119600.1" /db_xref="CCDS:CCDS46868.1" /db_xref="GeneID:60675" /db_xref="HGNC:HGNC:18455" /db_xref="MIM:607002" /translation="MRSLCCAPPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK" sig_peptide 97..177 /gene="PROK2" /gene_synonym="BV8; HH4; KAL4; MIT1; PK2" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 163..474 /gene="PROK2" /gene_synonym="BV8; HH4; KAL4; MIT1; PK2" /note="Region: Prokineticin; pfam06607" /db_xref="CDD:148298" mat...
AA_position 107
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0.000 | 0.000 | search_start;
0.092 | 0.092 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:CPC)?source=Homo sapiens (human)?to=0&format=json
0.473 | 0.381 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:CPC)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.478 | 0.006 | cgi_end;
GGRNA ver.2 by
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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