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2024-11-01 11:27:43, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_008487087            7727 bp    RNA     linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens iroquois homeobox 2 (IRX2), transcript
            variant X6, misc_RNA.
ACCESSION   XR_008487087
VERSION     XR_008487087.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060929) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..7727
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="5"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..7727
                     /gene="IRX2"
                     /gene_synonym="IRXA2"
                     /note="iroquois homeobox 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 6 long SRA reads, 9 Proteins, and 93% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:153572"
                     /db_xref="HGNC:HGNC:14359"
                     /db_xref="MIM:606198"
     misc_RNA        1..7727
                     /gene="IRX2"
                     /gene_synonym="IRXA2"
                     /product="iroquois homeobox 2, transcript variant X6"
                     /db_xref="GeneID:153572"
                     /db_xref="HGNC:HGNC:14359"
                     /db_xref="MIM:606198"
ORIGIN      
actcccgactccagactcccccaaaccccgaccgccggcctggcgcgcggctgcgcccaccggctccgcgctgctgccgccgccaccgccaccccgccgccgccccggcccgcgggccgcccaggctagtacccgggccggcctgcctccgccggccgtccgggtgcccgccgccgcgccgcgccccggccgggcgtggatggagggcgccgcgcgccctgcccgctgctcggcgtgacgcgggccccgcgccccgcgcccaccatgtcctacccgcagggctacctgtaccaggcgcccggctcgctggcgctctactcgtgcccggcctacggcgcgtcggctttggcggctccgcgcagcgaggagctggcgcgctcggcgtcgggctcggcgttcagcccctacccgggctcggcggccttcacggcgcaggcggccaccggcttcgggagcccgctgcagtactcggccgacgccgccgccgccgccgccggcttcccgtcctacatgggcgcaccctacgacgcgcacaccaccggcatgaccggcgccatcagctaccacccgtacggcagcgcggcctacccgtaccagctcaacgaccccgcgtaccgcaagaacgccacgcgggacgccacggccactctcaaggcctggctcaacgagcaccgcaagaacccctaccccaccaagggcgagaagatcatgctagccatcatcaccaagatgaccctcacccaggtctccacctggttcgccaacgcgcgccggcgcctcaagaaggagaacaagatgacctgggccccgagaaacaaaagcgaagatgaggacgaggacgagggcgacgctaccagaagcaaggacgagagtcccgacaaggcgcaggagggcacggagacctcggcagaggacgaagggatcagcctgcacgtggactcgctcacggatcactcgtgctcggccgagtcggacggggagaagcttccgtgccgcgccggggaccccctgtgcgaatcgggctcggagtgcaaggacaagtatgacgacctggaggacgacgaggacgacgacgaggagggcgagcggggcctggcgccgcccaagcccgtgacctcgtcgccgcttaccggcttggaggcgccgctgctgagccccccgcccgaggccgcgccccgcggtggccgcaagacgccccagggcagccggacgtctccgggcgcgccgccccccgccagcaagcccaagctgtggtcgctggccgagatcgccacgtcggacctcaagcagccgagcctgggcccgggctgcgggccaccggggctgcccgcggccgccgcgccggcctcaaccggggcaccgccaggaggctcgccctaccctgcctcgccgctgctgggccgccccctctactacacgtcgcccttctacggcaactacacaaactacgggaacttgaacgcggcgctgcagggccagggtctcctgcggtacaactctgcggccgcggcccccggcgaggccctgcacaccgcgccaaaggcggccagcgacgcgggcaaggcgggcgcgcacccgctcgagtcccactaccggtccccgggcggcggctacgagcccaagaaagatgccagcgagggctgcaccgtggttggcgggggcgtccagccctacctatagaagggccgagcacagcaatgcaaatctctgcggattctgggaggcgagaaccactgcgaagaaacacaaagatgaaatagccacctccgaagcccgtgcgcgttttcggatcatttacaattgcatttaagtacatatcaaggaggctaaaagtaaagtggaccctttgttttttaactacggagtgaatgtacatactaaactaccactgttacagcctaattaaacagacatcaatttggaaaaaaaaattgttccaaacaaatttgtggtccactcagaggcattttcaaatttcaataacactctgaagtgaattatgagaaagtttcatccaagtaacaatatacaataattatcactatataatttttctttagttgcccagtaccttgagaatcccaaggaaaacattcatttagactcaaaattaaaatataaatagatataataaatatgttttaaactgcttttacaaacataacattttaactatttttttgaaagcgttaaccgaagaggctatcttgggaacaatacacaaccgtctgtgctatgtggatattatgattaacatcatttgaatttctacaaatcgcaagggggacatgtccctttgatgtattttcaaacctttatgcaagtgacaaatccctacagatattttaaaggctaattataaggagaagtaatctatgacaatataattttccagttgctgaaaattactatctattggccataatgaaagcactcactagccctcccctttgcttgggctagaatgctacgaatctggttttcaacaatatgcacttggacctcagccattgatgggtggaagagaaaacactttgagccccagttttaggaagcagacaccccacttgtatgcatcagcctctcccttcagctgcatccctagaaacagatggatgtggcctcaaccggcacctctgtcccctccacccttggaacagagaatagtcttgtgtttcctaccatgaaggcagagtgttctctctctttctaagaaagataataattgaagacacaatttaagaggactgtattgctaatacaatgaagaaaggaaatatctgttgtccgtatttgcgcaatcccagataaaaggaaagaggaagaatttttgttgtttgtttaactctggccccatgataataaaagtatttttaaaaggtgttctaatgttactttgttctatatggagctgtaaataaatgaaatgtaatattcttaaagaattgactatgaggtttggggctgcctccaatacggactcgatattcacagaaaatacccagagggaagaaacaaaacacaatgctacacaagcactcgcatttttgtggggagataaattgacaatttattgtgtgtgactcctgatcaattattaatcgttagtgtcaacagcacggttataattaccttgggttattttagggaatttttttttcatttatctgatctggtaattagttaatgctcttgagtaataaattcaaagaagagctcataagagtcaagactcacccctacacctctcctcctttttggtgacctttaaggaaaaatacattcacccagtcgttctcagaaattccctccttgcctccattctaacagtgggcttttttttttcctgctataaataatgattccagaggaaaaggggaaaatgacaaacaaatagagcacagctggaattaataaggctgatcaaagttagtgggactgagactgctggcagcaaccacaggtctgaggcccataaaggtgccaggagttcttgcctcttccctctaagatcaagaaaaagggcaaatcgaacggtttaacccttgacaccttcttactggggaaaggtgggcttcggggagaacttttgtttttagtccttactaatagcggcgttgcggtccggctcggcctgaggccgggaagggcgctgcgtgttcgcccagagcgagtgcgggtcccgcgtgcacccggctctgcacccagcaaggtggggcaggacgcgggtcctcttggaccctgaaaggttaggaggtgagtgaccagattaggtggggtcaaggcagcatcctggggagtcggggggctgccggccgggtgctcagtaagctcggagggggcgaggaggtctcagctccaagacaggctcctcagtgcgtgcaagggggacggtgcactgtcgccgctgtcgccttcccagtgctggagaccctgggccgaaggtgcgggagctggaggcgctggcccggctgcctgcctggtgccctgcccgcgttcttcccggggttccgggccaccttccacccggcccacgtccttccccgcaggcgcgtgctccctggggagtcttgaggggcagaagctggctcaagcccttaaacgcccacccagggttggttccaggcctacgtgttttgcctgagcagctgcaatcatttcttcagggaactgggttgctcccggctctccagccccgggactgtccgatttgggaagggctccttcacctctaggcccatttctgccctgcagtctccccaagcgcggcgctgccgctgagtgtctgcttagttggtcacaccgagaccctaaaaggcaacgaccaaggccagtcgggagaaccgaacagtcgcaggtcagggaacagtcgcaggagagggggtgagccggctcctgacctcagccccggtgtgaccgctcgccttctgcggccccaaggtggtggctgggagccctgggccgaggcgcacctggaaaaggaggcagcgacggccagggaggccgcagaccgagaccctgaagtcagcctgatgggcaggaccaccccccccccaagccacgactgccccggcggccccagacccggccgcctgttcatgagttttcgacgccgcttttgcgacccggtgccctggaggggaaacccagtcgggccctccgaagcctccttataggggaatgcagccaggcttctggggatgggtagccaccaaccggcccagaagaacccgcgaggacccccgagctcccactggaggccccgctcctggcacccccagctctggtcccgggcttcagtccccttcctggtcctaccctataccccgcgcctgaagccgcagcgggacccatcgggttcctcccgccctgaccccggcctcccccgacctcttgcctcccagtccccctgctcccgtggtggtcgggactcctccgtggctggccccgggtgctcgcctcgctccctggccctcagcctcaggcccgcagctctggactctgggaaccgcgcgcgcagggtgaacaaagcagcgccgcagagcgccgggaaaccgaaagcgcccggtccgggttcaggacgatcgcggggtccggcggcgacggcggcgggggttcagggcccccgggaccaggggaggtgccgagcgcccgggttcctgccacagccagccttcctctcctccccggtccccccggtctcttctgtttcgggtcctgcctgcacaccgtatttctgctgcgctcggcggcagagctcgaaagccccaggccggcctgcccagcgcttttccaccgctctggcggcagcgttcggtcggcgcgagccgtgtagccccgatctgcggccccagcgcccaggcgggcagtggacaccgacgggaccccaggccgtacccccggcaccgccgcccccaggacccgcactgagaacgacgtacgcggctgccttgcaggcgacacctcgggggacgccccttgggcgcacggagcgagggccggcgggctcggggtgggttgccgcggtgtctgcaccgctccccgcgggcccctggtctgggaagtttgttctcttcttcagggagcttatgcgacaagccggatttcacaggccctacaaagcgcgttgagtcccctcgaagctctcggcgccaccagaacccgctggagggctgcctggaggtggtgatggatccaaggggacacagcggagtcagcggccgggatggaggcgacggagagcacgtctggtcgcctgagtcccatcccacagtaggcctacccggcagcctggggagtcagaagagggtctccagccacagccattacctcgctccttcctctccccggcctcggcgtccaggcccattggcttcaccctccgcgacctctggcggccctgactggggctctgggagcgggtagttcaggtggagggtctctggagccacacacctggcctcccgcaggtggggagacggtcccggaggcacaggaggagggaggcccaagcgtgcggctgggggtggtgagggtcagatggggaggggtgggtgctttgtaacctttggggtcctgggccctgtgatgagccccatcctttctgccattggactcggggtcactgtacagccctggtggagagagggtgaaggcttccctgggaacagcccactgagccccagaggccaggggaccaaagaggcggccgggaggacaactcggcccaagcggggaacagggggggcgaatcaggctccttggtacccaggatgacgttagtttatttaaataggaggccatggcccgtccaggtttattctccctggctctcaagcaatggaaaaacaatttgttttataatgctaatgtaatactcaactcctcaaataaaagtgcccttcatgataatgggcccagatataaacagaagcggctgagagggcccaacctgcttcttccaggcaggcctgtgaccgggagggggctgagtccaagcccagaggagagagacagtttgtttaaaatttctatggagctggactgttttataaaggaaggggctgagttaaggcatgctttgaaagaagacaaacagactttgcaggagctagaccctcaaatgagttatattttaaacaatttactgactttatgatctttaagcagaagcaaataacacattcaggtgcacagccgatgcaccccaactttccagtgcaaacaaggccgggaggagtgggaggagacctgtcagcaggcaggacaggaaaagcccctggtgaaaaacttctctggtgggtgaagatcagtgatggcccgaaatcatctcggtgttctgaagcctaggaaagctgttggcctggcaccggggccacttcctacaagaactggcagcctcaggcggaatgtttgagggcagctgacctgaacagactgatccgtctgcctggaagattcttctaactcagctggagaatggctgctcaataatgcaggttttggggttccacaggcatgagcaggccatgggtcaggctggttccggcatggctgtggtcggcccacttccacagaccaccaccgcatgctgtccatctatccaccggagatggccgcagtggggaccaggacaagaggacaaatgaggccctgtgtgtctgaacactgaccacttgtaaatcagctgctagatacaatgtgcttatacacaacatgcttatcctcctgccttggaaaatacgttttcaaatgagagaaatcacaaaatacgtgcaaagcatgatttgcatggaagtcatcaacatatcaaaagaggaccagatttaatgattcttatgtacgtctggcattctattctgagggggtagcaatgttaggatttgcaaaaaaatacagacagaataattcataaagtacatatttatcctatgaaatattttgcctttaaaaaaatagaatctctccatatcctgtagcaatcaagattttcacataatttgtgttttgacaatagtggttcaaaaattaaaaagtgatccttctcaaagcatacatttaaatatatcttcatcaaaaattgatagcaaatcaaatgtaagaaataaaaataactaaattatttgtgattttccaaaaaaatttttcttctagcatattcaaagctttctattaaaatttaaagacacaatgcacactataacttatccataaaaagttttcattaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]