2024-05-03 04:03:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_037449 94 bp RNA linear PRI 02-SEP-2020 DEFINITION Homo sapiens microRNA 3678 (MIR3678), microRNA. ACCESSION NR_037449 VERSION NR_037449.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 94) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 94) AUTHORS Kozomara A and Griffiths-Jones S. TITLE miRBase: integrating microRNA annotation and deep-sequencing data JOURNAL Nucleic Acids Res. 39 (Database issue), D152-D157 (2011) PUBMED 21037258 REFERENCE 3 (bases 1 to 94) AUTHORS Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R and Bhattacharya A. TITLE Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood JOURNAL BMC Genomics 11, 288 (2010) PUBMED 20459673 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 94) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from AC011933.17. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. ##Evidence-Data-START## Transcript is intronless :: LM611193.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-94 AC011933.17 20547-20640 c FEATURES Location/Qualifiers source 1..94 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="17" /map="17q25.1" gene 1..94 /gene="MIR3678" /gene_synonym="mir-3678" /note="microRNA 3678" /db_xref="GeneID:100500841" /db_xref="HGNC:HGNC:38891" /db_xref="miRBase:MI0016079" precursor_RNA 1..94 /gene="MIR3678" /gene_synonym="mir-3678" /product="microRNA 3678" /db_xref="GeneID:100500841" /db_xref="HGNC:HGNC:38891" /db_xref="miRBase:MI0016079" exon 1..94 /gene="MIR3678" /gene_synonym="mir-3678" /inference="alignment:Splign:2.1.0" variation 3 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="t" /db_xref="dbSNP:2079099267" variation 6 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:2145882488" variation 7 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:34571046" ncRNA 9..28 /ncRNA_class="miRNA" /gene="MIR3678" /gene_synonym="mir-3678" /product="hsa-miR-3678-5p" /db_xref="miRBase:MIMAT0018102" /db_xref="GeneID:100500841" /db_xref="HGNC:HGNC:38891" /db_xref="miRBase:MI0016079" variation 11 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:1221141338" variation 12 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1023765069" variation 19..22 /gene="MIR3678" /gene_synonym="mir-3678" /replace="ct" /replace="ctct" /db_xref="dbSNP:566829312" variation 21 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="g" /db_xref="dbSNP:2079099335" variation 22 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:2079099355" variation 25 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:970839589" variation 28 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /db_xref="dbSNP:2079099385" variation 29 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:2079099401" variation 32 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1022744336" variation 37 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:971542997" variation 44..52 /gene="MIR3678" /gene_synonym="mir-3678" /replace="gtttg" /replace="gtttgtttg" /db_xref="dbSNP:2079099462" variation 44 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /db_xref="dbSNP:1304833512" variation 46 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:778852738" variation 47 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:2145882510" variation 50 /gene="MIR3678" /gene_synonym="mir-3678" /replace="g" /replace="t" /db_xref="dbSNP:773471728" variation 53 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:2079099505" variation 54 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:2079099517" variation 55 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:928142560" variation 56 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /db_xref="dbSNP:577288506" variation 60..68 /gene="MIR3678" /gene_synonym="mir-3678" /replace="" /replace="attgaatca" /db_xref="dbSNP:2079099551" variation 61 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:1365949977" variation 63 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /db_xref="dbSNP:375112322" variation 67 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="g" /db_xref="dbSNP:1031189731" ncRNA 69..90 /ncRNA_class="miRNA" /gene="MIR3678" /gene_synonym="mir-3678" /product="hsa-miR-3678-3p" /db_xref="miRBase:MIMAT0018103" /db_xref="GeneID:100500841" /db_xref="HGNC:HGNC:38891" /db_xref="miRBase:MI0016079" variation 69 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:988363493" variation 70 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="t" /db_xref="dbSNP:2079099617" variation 73 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /db_xref="dbSNP:753118178" variation 82 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="t" /db_xref="dbSNP:1424776090" variation 83 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="t" /db_xref="dbSNP:1475188526" variation 84 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="g" /db_xref="dbSNP:2145882533" variation 85 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /db_xref="dbSNP:1163369708" variation 87 /gene="MIR3678" /gene_synonym="mir-3678" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1174219930" variation 88 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:915488824" variation 89 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1273558782" variation 90 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:755095016" variation 91 /gene="MIR3678" /gene_synonym="mir-3678" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:748999719" ORIGIN
gaatccggtccgtacaaactctgctgtgttgaatgattggtgagtttgtttgctcattgattgaatcactgcagagtttgtacggaccggattc
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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