LOCUS       NR_174029               2018 bp    RNA     linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus leucine twenty homeobox (LEUTX), transcript variant
            2, non-coding RNA.
ACCESSION   NR_174029 XR_001466497
VERSION     NR_174029.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2018)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000212.1.
            
            On Dec 8, 2021 this sequence version replaced XR_001466497.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267659.176937.1,
                                           SRR13267662.6307.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992415, SAMEA103992437
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-429               JAENSK010000212.1  2230516-2230944     c
            430-531             JAENSK010000212.1  2230189-2230290     c
            532-734             JAENSK010000212.1  2228654-2228856     c
            735-1654            JAENSK010000212.1  2227633-2228552     c
            1655-2018           JAENSK010000212.1  2227155-2227518     c
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Gallus gallus"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
     gene            1..2018
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="leucine twenty homeobox"
                     /db_xref="CGNC:2909"
                     /db_xref="GeneID:422976"
     misc_RNA        1..2018
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /product="leucine twenty homeobox, transcript variant 2"
                     /db_xref="GeneID:422976"
                     /db_xref="CGNC:2909"
     exon            1..429
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    81..1103
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_001199474.2"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            430..531
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     exon            532..734
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     exon            735..1654
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..2018
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acagagaaccctgcccggctcgccagtgggatctttattcacggacagacaggcggagggacggacggacggcccctgcgatgatgttccccagcctcatcgccccgccggccgtctacccgagcctgctgcggcccactcccaccctcaccttgccgcagtcgctgcaatccgccttctccagccactccagcttcctggtggaagacctgatccggatcagccggcccggcgcctacccgccccgcagcgctcccccgcccagcagcatgtcccccccggcctcagcacccaggacggactcggggacaccggagctgcccggctgcacggcggccaggaggatctgctcgtcccaaagctccggcagtgattccactttcctcaagttcggggtcaacgccatcctgtcctccaccccccgcgccgagtcctctcctgccttgcttcaaagcgtccctccaaagactttctccttcccgtactttgaaggatccttccagcctttcatcagatcttcctattttccagctgcctcagctgtcgtgcccatccccggcaccttctcatggccgctggctgcccgcggtaagccgcgccgtggcatgctgcgccgtgctgtcttctctgatgtgcagcgcaaggcactggagaagatgttccagaagcagaagtacatcagcaagcccgacaggaagaagctggcggccaagctgggcctcaaggactcacaggtgaagatctggttccagaacagaagaatgaagtggaggaactccaaagaaagagagctcctctcctctggtggctgcagagagcaaaccctccccaccaagttcaacccccacccagacctcagcgatgttggcaagaagtgctcaggggaggaggaggaagaggacgaaggccccatggcatgcccccccagcccccggcacccgctgccctaccacccagctccgcagcacctgcgggacaggctgggcccccagacacctccctccccatcacactccagcagccccagcaaaccctcagactgctcggactcagaggaagaggatgaggaaggggaggaagaagaagagataacagtctcttaggttgcccagctgcttctaccatcacatggggacattgcaaaggtgtacataacagagggctataaattgaagaggtgatgtcccacctacatgtccatgtgcttctccagggcaggttccctatcacattgccacaagccttcctgctccaggtattcctgatttttctgtcccatgagaaggttttcacacccatggtgtctgttgacctcttcaaaaccattcttctctgcttaacaaccaatatttgctcaattagcttcatcagcctgaaagcaaggagcagacagttcctttctttatagcagggaaatattttttccagacaaaacaccaccattaccaacaaaatacaggtgctgtggccattttcccaccttccaaccgaattcccagctattaccaagagttcagaacctgaggattgctctgatctggtgatcgtctcatcccaaggcaaaggatgtccatgagatgtgcagacaaaccactgtcccctcctcaccctcaccatgccacagacctgcgggaaccaccacaatcgccttcaggcctgtgcttgctttccgcttggcttctgctatatgctgtggacagaggaaaggggatgtacctctttggttttgactgaactttgctgtctttgcacagctgatatgaactgtacgctactttgtacacttactctgtatggatgttttataccaaggttattgtgaaagactataacaatggctgaataaggtttcttttttttttaattaaatgatggctgaactacgaacaaatgtagctgtttaaatgtgtaacttataaagaaacacttttattttgtattttaccatgtacagactttaaatatgtgtatatataataaaatgaatgactgccaaataaatgaatgtagatttccaa

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