LOCUS       NM_001397673            2548 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus PBX homeobox 3 (PBX3), transcript variant 6, mRNA.
ACCESSION   NM_001397673
VERSION     NM_001397673.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2548)
  AUTHORS   Coy SE and Borycki AG.
  TITLE     Expression analysis of TALE family transcription factors during
            avian development
  JOURNAL   Dev Dyn 239 (4), 1234-1245 (2010)
   PUBMED   20235232
REFERENCE   4  (bases 1 to 2548)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000308.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267649.96882.1,
                                           SRR13267659.292634.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992432
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                JAENSK010000308.1  9516648-9516730
            84-157              JAENSK010000308.1  9518416-9518489
            158-399             JAENSK010000308.1  9593882-9594123
            400-590             JAENSK010000308.1  9598665-9598855
            591-726             JAENSK010000308.1  9600346-9600481
            727-892             JAENSK010000308.1  9606974-9607139
            893-982             JAENSK010000308.1  9609198-9609287
            983-2548            JAENSK010000308.1  9611761-9613326
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="17"
                     /map="17"
     gene            1..2548
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /note="PBX homeobox 3"
                     /db_xref="CGNC:50438"
                     /db_xref="GeneID:417093"
     exon            1..83
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            84..157
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..939
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /note="isoform 4 is encoded by transcript variant 6;
                     pre-B-cell leukemia transcription factor 3; pre-B-cell
                     leukemia homeobox 3"
                     /codon_start=1
                     /product="pre-B-cell leukemia transcription factor 3
                     isoform 4"
                     /protein_id="NP_001384602.1"
                     /db_xref="CGNC:50438"
                     /db_xref="GeneID:417093"
                     /translation="

MKPALFSVLCEIKEKTGLSIRGAQEEDPPDPQLMRLDNMLLAEGVSGPEKGGGSAAAAAAAAASGGSSDNSIEHSDYRAKLTQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVGIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYKKNIGKFQEEANLYAAKTAVTAAHAVAAAVQNNQTNSPTTPNSGGYPASCYQSDGRIQ"

     misc_feature    109..585
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /note="PBC domain; Region: PBC; pfam03792"
                     /db_xref="CDD:461052"
     misc_feature    589..768
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            158..399
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            400..590
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            591..726
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            727..892
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            893..982
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
     exon            983..2548
                     /gene="PBX3"
                     /gene_synonym="Pbx3b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggggcggtgcggagcggggcggggcgcggcggctcgtcctgtgccgcggccgctgcctgctcacagggtgacacgtctgcagggaagcacgcgctgaactgccacaggatgaagcccgcgctcttcagcgtcctctgcgagatcaaggagaaaacaggtttgagcatccgaggagcccaggaggaagaccctcccgatccccagctaatgagactagacaatatgcttctggcagaaggagtctcaggtccggagaaaggtgggggatcggcggcagcagctgcagccgcagcagcctctggagggtcttcagataactctattgaacactcagattacagagccaaattgacccagatcagacaaatctatcacacagagctggagaaatatgaacaggcatgtaatgaatttactacacatgtgatgaacctgctcagagaacagagccgaacgcgtcccatttctcctaaggagattgaaaggatggtgggcatcattcatcgaaaattcagctccatccagatgcagctcaagcaaagtacttgtgaagcagtcatgattttaaggtcgaggttccttgatgccagaaggaaaagacgcaacttcagtaaacaagccacagaaatactgaatgagtatttttactcccacctcagtaacccttaccccagtgaagaagccaaagaagagctggcaaagaagtgcagcatcacagtatcgcaggtctccaactggtttggcaataagagaattaggtacaagaagaacattgggaagttccaggaagaagccaatctttatgcagcgaagacggctgtgactgcagcgcatgccgtggccgcagccgtccagaacaaccagaccaactcccccaccacgccaaactctggtggataccctgcgtcatgttatcaatcagacgggaggatacagtgatggcttgggaggaaattcactgtacagtccacataatttaaatgctaatggaggctggcaggacgcaactactccatcttctgtgacttcccctacagaagggccgggaagtgtgcactctgatacctctaactaatctcctagcaacactttttccctgagctgagatgccttcatcagcgcagtcagagtcgcaggagaaaaaggaaagaatttttttgtagccaaccacctacagctttactgtaaaaccttgtcttactagaaaacttggtaaatctgttttttaaaggtatcataatcatttgtatttatacttaaaacacacaatgttaaaaagcactttatccaattgggccaagatttagcattgtttgtagccctgttactattttatcataatttattatcggcgattttaacagtgtcggtctaacagttgccaattacttggccttaagggtaaaagtacagtacaagcttaacctcaagagcaagagcgggcacaaaggaacagctcacctgaatctcaactgcgtgcatattttcgtgggaagtcaaaatgagttacagacttgggttgcgtttagccttttcatctctcttacagagttggaataaagaggtctgcttggttatttcggttaacagcggttgtgtttaagaatccttattcgtcacatttttgttgtgatctgttgctttgtaagttaggttgggtaccaggagcatctttccttgctgaccgccaggaccccccgcctgctctctgtatttcggcaatggactcagagtgttcttaagaggtgaagatattgctgcttctttcagtgagccaccagctgggttttacagtacgagtaggtgctgcgcggctgccgagatcggttacttcttctgggcagccaaacaaacacacagaaaacaaaaaggaaaagcgaaggaaaaagcaccattatatggattgttgtacatagtgtagcaaaagagtatttatacatctcaccaatcaaaacacagctttattacctcatgcgaactcatacgaaccaatagactttcaacatgttctgtagcttagagtgctcacttactacctctgaacgatactcacgctgtagtttgtctctttcttatctttttgcatcttgtaattaactctttgtttccctcataaattgtaatgtacattgtaatcttttaaaagaatcagggttgcgtttgcaacttttaaaagagctgaagtggaaacattgggtcttaggtttaacagaacagtgaaacttgtaaatactgagaaacattttgaatgttgttcatcttgttactaatccacgcaaaaaatacaactaattgtaatgcatacagacttcagtatcagtactgtatattcaccctgtgtaacagggggccctttctttctctcttttgtattgtatgcgattctgaaactgattgagtcatgaaaataatttgtggcagtgattctaatgtattaaaacgtttcgtgttactttctaactggattacaccctggattgagaagtcttcctcgtggtagttatatgtagtttcaaacatgaataaactttttgctttcatgatcaaa

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