LOCUS       NM_001396064            2699 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus ladybird homeobox 1 (LBX1), mRNA.
ACCESSION   NM_001396064 XM_025151419
VERSION     NM_001396064.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000232.1 and EU339182.1.
            
            On Sep 23, 2021 this sequence version replaced XM_025151419.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns
                              SAMEA103992393, SAMEA103992415 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-681               JAENSK010000232.1  3034699-3035379
            682-1045            EU339182.1         3-366
            1046-1047           JAENSK010000232.1  3035904-3035905
            1048-1301           EU339182.1         369-622
            1302-1304           JAENSK010000232.1  3036160-3036162
            1305-1363           EU339182.1         626-684
            1364-1455           JAENSK010000232.1  3036222-3036313
            1456-1519           EU339182.1         696-759
            1520-2699           JAENSK010000232.1  3036378-3037557
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="6"
                     /map="6"
     gene            1..2699
                     /gene="LBX1"
                     /note="ladybird homeobox 1"
                     /db_xref="CGNC:61460"
                     /db_xref="GeneID:100431103"
     exon            1..1011
                     /gene="LBX1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    351..353
                     /gene="LBX1"
                     /note="upstream in-frame stop codon"
     CDS             687..1511
                     /gene="LBX1"
                     /codon_start=1
                     /product="transcription factor LBX1"
                     /protein_id="NP_001382993.1"
                     /db_xref="CGNC:61460"
                     /db_xref="GeneID:100431103"
                     /translation="

MTSKEEAKPSSGEERRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVRRSYALCGTAHLLSAAEKHPAAGLPLSGRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPNPAVDIVALAELEPSAEGRGKARPGSPPPPPATREPGAPPPPRPASPPTERPRSRRDSEEEEDEEEEDVEIDVDD"

     misc_feature    1062..1232
                     /gene="LBX1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            1012..2699
                     /gene="LBX1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcattggacagagcgggagagagcgagcgagagagagagagggcgaaaagtgtcattgaagataattgattacctcccaatcaacaataacttgttagcaatagtcaattaccccgtctcttctcgcctctttccccccggtccgagggctcggtgcgagggctgctctgcccctcttcgaagtctcctttattttttttatacatttctatgtctcttttttcatttttcatttttgatttttaatttttgattacgtgccggggcggtgtggggggaatcctctcttttttttgggggggggggggggagggcagggaaagtgcagcgatttggggtgtttcttaaaatagcagccgggaagaggaagagagagaggagggagagagggagagagagagagagaagagagagaagagagagagagagagagagagagagggaaaaaatccgctcccgaagccccgggacagaggcacggcgcgaccacctccggcgcgggaccgacggccgctccgctccgcgcttcgctccccgcggccgctcccccccctccccgacgtggccgcggccggacccggagctgcgcttcaacttttgctcgccgcctccccgagctcttctccccgcggcagcgcatccccggagcgggtggggaaggcagccccgcgccgcccggccccaccatgacttccaaagaagaagccaagccttcctcgggggaagaacgacggaggagccctttggatcacctcccgcctccggctaactccaacaaacccctcacccctttcagcatcgaggacatcctcaacaagccgtcggtgcggaggagttacgcgctgtgcgggacggcccacctgctgtccgccgccgagaagcaccccgcggccgggctgccgctgtcgggccgggcgctgctctcgcagacgtcgccgctgtgcgccctggaggagctggccagcaaaaccttcaaggggctggaagtcagcgtgctgcaggcggccgaaggaagggacgggatgacgatcttcgggcagcggcagacgccgaagaagcgtcggaagtctcggacggccttcaccaaccaccagatctacgagctggagaagcgtttcctctaccaaaaatacctgtcgccggcggaccgggaccagatcgcccagcagctggggctcaccaacgcccaggtcatcacctggttccagaaccgccgcgccaagctcaaacgcgacctggaggagatgaaggccgacgtggagtcggccaagaagctgggccccaaccccgccgtggacatcgtggccttggccgagctggagcccagcgccgagggtcggggcaaagcgcggcccggttccccgccgcccccccccgccacccgggagcccggcgccccgccgccgccccgccccgcctcgccccccacggagcggccccgcagccgccgggacagcgaggaggaggaggacgaggaggaggaggacgtggagatcgacgtggatgactgaggggcggccggcgggcctcccccccgccccccccctccccgcgccccccagccccggcccatcgccccgctctccccccacacgcacccccggcaaatcgagagctccaacccggcacccccggccccgggccgggccgcttctctcctcggtcacagcaataagcggctgcgctcacccacaccgcaaacccgtagggcgcagagtcggtatatccctccgcccgtacatctttggaatggtgcaattacggacggcttctgtataaatatttaaacgtatatactggatttctttctcctccttcccccttctttttgacgtttcggttacggtttcttttcgtaccagctaaccacgggcattcttctatccataacccggcgccaagccgagttctgggctccgaaacgacccgcgttcggggaaatttgggtgatcttcaacccggcgaccgcaccaaattcgcgacttctccttccttgcatgtctcaaatgtgcacgaaccgattctgtggggtttgttttttttcccccttaaaaaacaaaaaccacttattttccccttcacgattttgggcacttggggacgggttttaacgccagctgaacgctctgccttttcttttcctgtttcgtttttttcctccccggagcaccgagattcgctccccgtgcgatttctgcctccttttacccatccgaggctctttttaccgggtttttttttccctgctatcgctgcgcttttgtgaagaagctgcctttcgtatttttgatatgaaggtggtaagaaacgaagcagatcaaaacgaaacgaaacaaaacaaaaagaataattaaaaaaaatcctaggattattttttactctttttagaaaatttttgcatgctccggaaataaaaagggcgaccctcgagatggatccatttaaatatgacgctgtaaattaaaatcaaatgtacagatgtaagatctgggcttttttttccccccttttccttttgtttgaattgtacgaacccgacaggcctgctatttaagtcccggtagggacagtgtcgctttatttaccgtctcttagaattgtacagatagctctttttttctctctctctcttttttcttttttcttttttttcttttttttttttttttccgatacaataaaatctttaccattttaat

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