LOCUS       NM_001305260            1807 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus homeobox C10 (HOXC10), mRNA.
ACCESSION   NM_001305260 XM_001233805
VERSION     NM_001305260.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Li J, Lee MO, Davis BW, Wu P, Hsieh Li SM, Chuong CM and Andersson
            L.
  TITLE     The crest phenotype in domestic chicken is caused by a 197 bp
            duplication in the intron of HOXC10
  JOURNAL   G3 (Bethesda) 11 (2) (2021)
   PUBMED   33704432
  REMARK    GeneRIF: The crest phenotype in domestic chicken is caused by a 197
            bp duplication in the intron of HOXC10.
            Erratum:[G3 (Bethesda). 2022 Feb 4;12(2):. PMID: 35100383]
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   3  (bases 1 to 1807)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1807)
  AUTHORS   Peale FV Jr, Mason K, Hunter AW and Bothwell M.
  TITLE     Multiplex display polymerase chain reaction amplifies and resolves
            related sequences sharing a single moderately conserved domain
  JOURNAL   Anal Biochem 256 (2), 158-168 (1998)
   PUBMED   9473273
REFERENCE   5  (bases 1 to 1807)
  AUTHORS   Izpisua-Belmonte JC, Tickle C, Dolle P, Wolpert L and Duboule D.
  TITLE     Expression of the homeobox Hox-4 genes and the specification of
            position in chick wing development
  JOURNAL   Nature 350 (6319), 585-589 (1991)
   PUBMED   1673231
REFERENCE   6  (bases 1 to 1807)
  AUTHORS   Nohno T, Noji S, Koyama E, Ohyama K, Myokai F, Kuroiwa A, Saito T
            and Taniguchi S.
  TITLE     Involvement of the Chox-4 chicken homeobox genes in determination
            of anteroposterior axial polarity during limb development
  JOURNAL   Cell 64 (6), 1197-1205 (1991)
   PUBMED   1672266
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000489.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001305260.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR523254.1, BU405707.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992428
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-816               JAENSK010000489.1  35540-36355         c
            817-1807            JAENSK010000489.1  31589-32579         c
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="34"
                     /map="34"
     gene            1..1807
                     /gene="HOXC10"
                     /note="homeobox C10"
                     /db_xref="CGNC:13664"
                     /db_xref="GeneID:770471"
     exon            1..816
                     /gene="HOXC10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    12..14
                     /gene="HOXC10"
                     /note="upstream in-frame stop codon"
     CDS             30..1094
                     /gene="HOXC10"
                     /note="Hox C10"
                     /codon_start=1
                     /product="homeobox protein Hox-C10"
                     /protein_id="NP_001292189.1"
                     /db_xref="CGNC:13664"
                     /db_xref="GeneID:770471"
                     /translation="

MSCPNNVTSNSFLMDSLAGTCRGENYSSSQGMYMQPGSDFSCGVMRNCGIIPSLSKRDEVNSATLSLSTYPSYLSQLDTWCDPKNTYRIEQPVARQLPSCSFPTNVKEENVCCMYNADKRAKNATEAALYPNQMPEPCLNDHEVPVPSYYRASQGYPSMEKTSNCSNPNEFEASFESRASLNPRNEHLEPAPPPPPPPPPPPPVAKVSFPENTKTDNTQNTSTNEIKTEKSAPAPKISPSEAEKELNKNTDTSTDNSDNEAKEDIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT"

     misc_feature    870..1040
                     /gene="HOXC10"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            817..1807
                     /gene="HOXC10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtattcctccttaaaaaccctctctgaaaatgtcatgtcccaacaatgtgacttctaactcgtttttgatggactcgttggccggtacctgtagaggggagaattattcctccagccaagggatgtacatgcagcctgggagcgatttcagctgcggagtcatgaggaactgtggaattatcccgtctctttccaaaagggacgaggtgaatagcgctaccttgtctctcagcacctatccatcttacctttctcagctagacacttggtgtgaccccaaaaatacgtacaggatcgagcaacctgttgcaagacagctcccatcctgctccttcccaaccaatgtcaaggaagagaatgtttgctgtatgtataacgctgacaaaagggctaaaaatgccacagaggcagccctctaccccaaccaaatgcctgagccttgcctaaatgaccatgaagtccccgttcctagctactaccgagcaagccaaggttacccctccatggagaagacgtcaaactgcagcaatccaaatgagtttgaggcaagttttgaatccagggcgagcctgaacccaaggaacgagcatctggaaccagcaccaccacctcctcctcctcctcctcctccgcccccggtggctaaagtgagtttccccgaaaacacaaaaacagataatactcagaacacatccacgaacgaaattaaaacagaaaaaagcgccccagcacccaaaatcagcccttcggaagcagagaaagagctgaataaaaacactgacaccagcactgacaattctgacaatgaagcaaaagaggatataaaggcagaaaacactacaggaaattggctgacagcaaagagcggaagaaagaaaaggtgtccttacaccaagcaccagacgctggagctggagaaggaattcttgttcaatatgtacttgacccgtgagcgccgcctggagattagtaagagcattaacctgacagacagacaagtcaaaatctggtttcagaaccgcaggatgaaactcaagaaaatgaacagagagaaccgaatccgcgaactgacgtccaattttaatttcacctgagcgagccccggtgcaggagggggaggaggggggagagaggaggagctctgtgcgctttgggggggtttattttattttattatatattttttttttcccctgggtataaatgcaatgcgtacgcgggaaggaaaggacctccatcatttgggtgtttgcagttcgtagggagagaagatgcagcggtctgagcatgaggatatatattgcatccgtgtttctatgtaaaataaaggaggcggtggcttgaaaaccgccccggtcaaatgttttaagttatttacgtgcagcacaaaagcagaaggacctttctcgatgcatttttatgtttaggataataggtgcgtctcgaagtttgcttttcatatcctagtgttagcctgcctcctgtgtaataaaaatggcgaaaaaatggggctcatagaagtgtctgtacattcaagttgcagtgggatcatgctcacatcctgtagtgatgcggtttcttccaatgaagtgatgctatctaccatatatttaagacaaaagaaataataattaaaaaaaaaaaaataataaagcagtcttggtatcctaatgtgaaaacaaaacaaaacaacaaaaaaaaaaatccatttctcgtggctgtgttatttaaatatattctgtacgtgttatactttgcatgtatcttcctttatggagcaaaataaatttcatagactcgtgtacaa

//