2024-11-01 10:09:22, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_002459917 1883 bp RNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio highly divergent homeobox (hdx), transcript variant X2, misc_RNA. ACCESSION XR_002459917 VERSION XR_002459917.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007125.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1883 /organism="Danio rerio" /mol_type="transcribed RNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="14" gene 1..1883 /gene="hdx" /note="highly divergent homeobox; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns" /db_xref="GeneID:797948" /db_xref="ZFIN:ZDB-GENE-140106-165" misc_RNA 1..1883 /gene="hdx" /product="highly divergent homeobox, transcript variant X2" /db_xref="GeneID:797948" /db_xref="ZFIN:ZDB-GENE-140106-165" ORIGIN
tgtcacatctgacgtcacgatcatgattagaattgatgatcggacgttttgatttcattgtctagccaggggattcgtaaagaaatctgctgaattcgagggggccgttgattttctacgaaagatctggggagtctaacctgaagcgtgcaggaacacatgtgtttataacgtcctccctggtacagctttttttcctcccagaaacgtctcctaaaagcagatggctgaatgctggtgtgaatagatttacacccagcagtgcgtctctgctgcatgttcagattaatcaacctgattcctggggtctctcagcacatccatcagagggatggaaaaatggctggaaaagaggagcattcacactatgaacttgcggtctgtatttactgccgagcaacagcggatcctggaacgctattatgagaacggcatgaccaatcagagcaagagctgcttccagctcatcctgcagtgtgctcaagagaccaaacttgacttcagcgtggttcgaacatgggtaggaaacaagcggcgaaagttggcatctaaggcagatcagaatggggctactgctcatggtctaccccatcaacacttgggcgctgctggggcgtttgttgccggatcagtgttaacagcagagatggcagccatgcggaacattcagcgcggcccttcagtgacccacctccttcctccacaggcctcatcctcctcatcatcgtcttctccgtcatcttcctctccgctcagcggacacagtgacgtgatactgacaggcatatatgccagctgctttgatgcttctgctcaaaacaggacagggaccaagtcgttgcccttgcacacagaaatggagttgccaggtcatgatcgcacagatgcagctttgcatcgcaccactattgcagccgctatccagcgtaaagcccccatcatccccagtcccggtgcactcaaacccgtcacatccagagactctgcagtaatcgctcccagttgggccaagccatgcagaacatctcaacctccatcatggaatcttacctcccccctaaaaacgtctgtggctcatcggggtcctgtagacagcggtgctcaggttcagcaagctttgaccgtggctggattaggagagcgacctcccacaggaaacgctccagaaaccgtggtgagaaaatcgaggccggtcgatgcatcggagatcttctcgattgccatggaaacggcagacgctgatgacgaatattccagagaagaggagctggcgaacatggcggtgcagatgcagtgcagtaaaggatctgtggatggtgggcggagatccagcgcaggttcctctgccttggttgacagcccaggactatcagaaaagagccagtcagcctgtgcgctcaacctctcaaactctgctctttttggagagaagggatgcaaaaccagcagcttcttgctgaacagatcatcgtcccctatcagcttaccattaaaactgatctcccaggcatcgtccagaattccctgtctcaaggtaacaagtaacatgtcagctctttggcttcacagtaactcccggaaaagaacgtgtttattaagctgcaggacaggacgcagtttagcgacagagacttgtacacactgaagcgctactgggataacggcatgaccagcctgggctctctgtgcaaagagaagatcgcagccgcagctattcaactcaatgtggacactgaaatcatcaagacgtggattggtaaccgcagacggaagtaccgtctcatgggcattgaaattccaccacctaaaggaggaccaatcatgttctcaaatcagccagcgccgcattcacctcacatccctgaagatgactttcagactgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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