LOCUS       XM_021481367            2089 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio short stature homeobox 2 (shox2), transcript
            variant X3, mRNA.
ACCESSION   XM_021481367
VERSION     XM_021481367.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007126.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="15"
     gene            1..2089
                     /gene="shox2"
                     /gene_synonym="zgc:65884; zgc:77344"
                     /note="short stature homeobox 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 71 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:394171"
                     /db_xref="ZFIN:ZDB-GENE-040426-1457"
     CDS             423..1088
                     /gene="shox2"
                     /gene_synonym="zgc:65884; zgc:77344"
                     /codon_start=1
                     /product="short stature homeobox protein 2 isoform X3"
                     /protein_id="XP_021337042.1"
                     /db_xref="GeneID:394171"
                     /db_xref="ZFIN:ZDB-GENE-040426-1457"
                     /translation="

MLASERSRDSSSPKLTDGNTDMKERKEDCKPLEDETQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHHLHSHLAAHAPYMMFPAPPFGLPLATLAAESASAASVVAAAAAAKTTNKNSSIADLRLKAKKHAAALGL"

     misc_feature    549..719
                     /gene="shox2"
                     /gene_synonym="zgc:65884; zgc:77344"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1020..1073
                     /gene="shox2"
                     /gene_synonym="zgc:65884; zgc:77344"
                     /note="OAR motif; Region: OAR; pfam03826"
                     /db_xref="CDD:461067"
ORIGIN      

caccccatcccgcctctatgggaagggggctcgcggtgagggaaggtaatgcgcgcggatcaaggggcagacgcttcgctaagtataaatagtgtgacttcaatagtgaatcggcagcaagtctgtatacactctccgcaacaagaggaattgtcaaagatctcatcatcacaccatcatctcgcatttaggccgatagaaagagagagagcgcgcgcgctgttcccgttcttatggtagtctgctaaggatctaaaaggaagattaaagtgaaggagaagaaggaagtgatcacgtaccgggaggtgttggaaaccggttcggtgaggaaccgggagagtctgtcggcggatccaaaccgcgaggaaatcagcagcatcacgcggagcggagtgcgctcatcgccggtcagggaagcggacatgctcgcgtcagagagaagcagagactcgagcagtcctaaacttacagacggtaatacagatatgaaggaacgcaaagaggattgtaagccgctggaggatgagacacagactaaaatcaagcagagaaggagtcggactaactttacccttgagcagctcaatgagctggagagactgttcgatgaaacgcactatccggacgccttcatgagagaggagctgagccagagactcgggctgtcggaggccagggtgcaggtttggtttcagaaccgaagggctaaatgcagaaagcaggaaaatcagttgcataaaggggttctcatcggagcggcgagccagtttgaagcatgtcgcgtggctccatatgtcaacgtgggagctctgcgcatgccctttcagcaggtgcaggcgcagctgcagctggacagcgccgtggctcacgcgcatcatcacctgcactcgcacctggctgcgcatgcgccgtacatgatgtttcccgcgccgccgttcgggttgcccctggcgacgctcgcagcggaatccgcgtcggcggcgtcggtggtggcggcagccgccgccgcgaaaaccaccaacaaaaactccagcatcgcggatctgagactgaaggcgaaaaagcacgccgcggctctgggactgtgacgtcacattgcattgaacgacggcatatcgacgttaaccacagacaataaacgcaaattttcgtatgaaggacacgcaagaaggagaggctatttataaagacaaactgtgaaatggagaaacatttcgtggatcttcacaaggatggaaacaactgcaagatgcagaactatacgagaaaataaagctgaacttaaagcgaacagaactttttttttgtgcagaacacgagaggtttgaatccgaaaataatgatataaagcagctgggacagttgtgtgacaacgcggacatttctgctttaacacgttattagtaattaatgaaaataaagaggctggcctcgtttatttgaaacaaagtttctttgtggatatttgtgaaatattacagaaataccttttgttgccaaatcatgaaaactccagtgttaaaaaccccccatttccgtcctcacggatgacacacactttacatgctctctggtttatgaaactaaataaatgagcattaaatgaaacgacgaccatttcccttgttgttaataatcagtgtgttgtggatataacccaatcttatcaggtaatttattcagtggagtgtctaatttcacttgcatccatgcctaattcttattatgagcacacatggctttcattattggtgtataaatcaaatccacatgtaaaatacccatgtttatgccaacaggaaaatatatatttatattattttggtgctttaatgcttcattgaggcattgtgagggcatcctggatttccttacactgcttatttcttcttgtccatctctttcccggtgtgtacaaccatgtgaatctcagaaaaaaaatgtaatgttcatgttttttaagggagttataaaaggacatcgactgcgggcactcatttgatgatatttatgattttaccatgactgtgaaacgtgagctgcagctaaacacagtgttttcgatttataaaataaatgttaaaaacac

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