LOCUS       XM_005171012            5274 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio pbx/knotted 1 homeobox 1.2 (pknox1.2),
            transcript variant X2, mRNA.
ACCESSION   XM_005171012
VERSION     XM_005171012.3
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007112.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 15, 2017 this sequence version replaced XM_005171012.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5274
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="1"
     gene            1..5274
                     /gene="pknox1.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:170445"
                     /db_xref="ZFIN:ZDB-GENE-020123-1"
     CDS             142..1479
                     /gene="pknox1.2"
                     /codon_start=1
                     /product="homeobox protein PKNOX1"
                     /protein_id="XP_005171069.1"
                     /db_xref="GeneID:170445"
                     /db_xref="ZFIN:ZDB-GENE-020123-1"
                     /translation="

MMTSPSVSMEDYQEAEQMQVGEPTAGQVEERLEEEEEEEEEEERDEEEEDSGSAPSEPQTPMEVYKSAIYRHPLFPLLALLFEKCEQSTQSSECVTSASFDVDIENFVRNQEKEGKAFFSEDPDLDNLMVKAIQVLRIHLLELEKVNDLCKDFCSRYIACLKTKMNSETLLSGDPGSPYSPSPTQPQNPFTGAMSPQGIVVPASALQQGNVTVTAVNPTQMVTGGTVYQPVTVVTPQGQVVTQTLSPGTVRIQNSQLQLQLNQDLSFFSQEDGSSKAKRGILPKHATNVMRSWLFQHIGHPYPTEDEKKQIALQTNLTLLQVNNWFINARRRILQPMLDASSSDTPKSKKKTPQTRPLQRFWPNSLASSVSQQQVTMEDGTTVTVGVGEDGLQTLSSDGATLAMQQVMMGGHSEDDDDEDDEEDEDTDPSHSDMSRLGLETSDSL"

     misc_feature    412..669
                     /gene="pknox1.2"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(967..981,985..987,1045..1047,1063..1065,1102..1104,
                     1108..1113,1120..1125,1129..1137)
                     /gene="pknox1.2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(973..975,982..984,1111..1113,1120..1125,1132..1134)
                     /gene="pknox1.2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1021..1137
                     /gene="pknox1.2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

atgaggagattcccccaatgtgtaaagcgctttgctgtataaatttcgtcgacatcagagtttctattgttgtatcagttatagcggtgctgaagatcagctttatagaatgccccagcgttgtccacggcaacagtaactatgatgacatccccatcggtgtccatggaggattaccaagaggctgaacagatgcaagtgggagaaccgacagcgggacaagtggaggagaggctggaggaagaggaagaagaggaggaggaggaggagagagacgaagaagaagaagacagcggctcggctccgtctgagccacaaactcctatggaggtctacaagtcagccatttacagacacccgctgttccccctgttggcgctgctctttgagaaatgcgagcagtccactcagagctcggagtgcgtgacctcggccagtttcgatgtggatatcgagaactttgtgcgaaaccaggagaaggaaggcaaggctttcttcagcgaggaccctgatttggacaatctgatggtgaaggccatccaagtgttacgaattcacctgctggagcttgagaaggtaaatgacctgtgcaaagatttctgcagccgctacatcgcctgcctcaagaccaagatgaacagcgagactctgcttagcggagatcctggaagcccctattctccatcaccgacacagccgcaaaacccattcactggagccatgagtccacaaggtatcgtagtgccagcatctgctttacaacagggcaatgttactgtcacagcggtcaaccccacacagatggtaacaggtggtacagtatatcaacccgttacagtagtcactccacaggggcaggtggtcacacaaactctgtcacctggaacagtacgaatccagaactcacagcttcagctgcagctcaaccaggatctgagttttttcagtcaggaggacggttcgtctaaagccaagagaggcatccttccaaaacacgccaccaacgtcatgcgttcatggcttttccagcacattggtcacccttatccaacagaagatgagaagaagcagatcgccctgcagactaacctcacgctattgcaggtcaacaactggtttattaacgcccggcgacggatccttcagcccatgttggacgccagctcttcagacacacccaagagcaagaagaagacgccccaaacgcggcctttacagcgcttctggccaaactcactcgcctcttctgtgtcccagcagcaggtcaccatggaggacggcaccacagtaaccgtgggtgtgggggaagacggcctgcagacgctttcatcagatggcgccacgctggccatgcagcaggtcatgatgggaggccacagtgaggatgatgacgatgaagatgatgaagaggacgaggacaccgatccgtctcactccgacatgagcagactgggcctggagaccagcgactcgctgtagtaggactgaaccacacacactcgcacactcacgttagcattgagagagacaacagagcactaagaaggagatgtcccacacaaacacacacacacacacacacctcagctgcacacgtcctccagctgtcaaacagcccgcttggagaacagagaaaagggcttaaagccacacacacaccacaaaacgaccccccctccccacacacacacacacacacacaggtcaaaaaaacaagacacaagcacaagtctctctcacgcaaagcatttctgacacagattagccgagtgcactttttgtatgatactgtaaacttaaagaaagtgttcaaagcacatttcgaaagagctaaaaaaggaaggaaattgatttaaaaaaaccagttgttaatgctggatgattgggttgtgcttatcctgacggtctgggatatttccacaacgagatttcgtctcttgcatgcctgtgtttgctttaatcaggcaccaggaaaaagaaggaactatttttatagtacactgtcacagatgatcggtgccaatatgtttgttttctccgtttgtttgttttttgctctggtttgctatgttttgtaaggagtatttatgtatgaaaaagacttttaacctgctcaccctgcttttttttggatgggtggatttggattgtggtaactacttagtataaagtacacaatgatttgtatgctgaaggcagagttgctgacgatgccttatgtttttacatttcgaatgccacaatgtgagacagtctcatatctgtggaaacttatttccaccaccgaatgaacaaaaatgtaattaattattgttctcagaattgtgaggttatatatatatatatatatatatcacaatttggacttttctgtttctatttaagaattacaaacttgtctcataattttgagtttctctttgaattcttagcttgacttggcctattctgagttgatcttttgcataattcaacgtttattgcgattctaagcattgtagccattctgagtttatcttgcacagttttgagcttattacaattctcagtttatctttgcgctatcctgagtttattttaattctgagtttattttaattctgagtttatcttgcgcaatcctgagtttattttaattctgagtttatcttgcgcaatcttgagtttattttaattctgagtttatcttgcgcaatcctgagtttattttaattttgagtttatcttgcgcaatcctgagtctattttaattctgagcttatctttcgtaatcttgtgcaaatttagattttacctcattcacaattctaagtttatatcttgcgcaattctgattttattgtaattcttagtttatcttgcacatttttgagcttattgcaattctgagttgattgtaattctgagtttcttgcgtaaattttgagttcatctcattcgcaagtctaagtttatcgcttaccaatcctgagtttattgtagttcttagtttatcttgctcaattctgagcttattgcaattctgagttgatctaacgcaatctgagtttgtcataattctgagcccatcttgcgcaattccgagtttattgcaattctgagcttatcttacgcagttctgagtttattgtaaatctaattttatctcttacccaatcatgagtttattttaattctgagcttatcttaagcaattctgagtttgtcgtaattctacgcttatcttgcgcaaattttgagtttatctcattcacaagtctaagttcatctcttacctaatcctgagtttattttaactctgagcttatattacgcagttttgagttaattgtaattctgagtttatcttgcacaatcttgagtttattgtaactcttaggtcatcttgcacaatcctgagtttattgtaattctgagtttatcttgcgcaatcctgagtttattgtaattctgaagttatcttgtgcaatcctgagtttattctaattctgagtttatctagctcaattctgagtttattgtaattctaaggttagcttgtgcaatttcgagtttatcttgcgcaattctgagtccactaaaattctgagcttatcttgtgctgttctaagtttatatcttgtgcagtcctgagtttattgtaattctgagctgagtttatctaatgcgcagttctaaatttatcttttacacaatcctaaattctgaactggcacagtcctgagtttattgtaattctgagctaatcttgcacaaattttaagttcatctcatgcgtaatctagagttgattttaattctgatcttttcttgcaaaatcctaagttttttgcaattgcgagcttatcttgcgcaactctgagtttatttcaagcaaacctgagttctttacaactctttgtctctaaattcaaaaggttttttgtaattatttgtctttcttcattcgacacagttctgaccgaatctcgtaattctgtttatttattgcaattttgaatcccacgattatacgtttatttaatgcaattatgatgtaacccagttcttacgattccaggtttgtatctcacagctcttaatttactgtaatttttttctctcaattttaatctgttcgcttctcacaatttagtttttcctcttgcaattctgagttcctttttgtcctgtttatttattcaaattgagtttatatattgctgttttaactgtatagccattttgaatttctctcgcaatttatttattgtctttttgagctgatctctcgcaagtttatttatatcttgcaattctgagttttttcccaattacaccacaatttaataaataccacaattttctttttttcttctcagaattgttcgcttgtatctcacaattcctgtatttctcagaactgaaaaataataattgtgatgggaatgtggtggaaataagcttccatacatatctgatgttacttcctgtgcaatcgacatgaataccgtggccaaaaaaacgatgcatttgcaaggttgtgataatgtttatgatataaatgcctgtacttgttatatgagaaggaactgttatcgctttttaatgatcatattgctgaaaactcccaacagaagcggaagagagaaggacgtcgatcagactttgtatttatgtatatttttttgactcacgagggactcgtctttgatgttaaacctctttagcgcgaacattaatgatggatttctttttaatctgcgttatcatggacaattctcacgtttttcaccatgaaatcgtggataaaacaaaacattttcaacatttaagaattgactgcatgtgctttcatttattattgtatttttagataccgtatgctcacaatctatcagaataaaccccatgagataccaaaataagctgatatatttggattatgcgtctattttgtcccgttttgcgattctacagctgtcacttacttaagctcatgtatccctgttatttagcgtgttcagaatgtgctttaggcagtctgtactgagcggcttttcatttccagctgtagtcttgtgaatgtgatgccatcagtcagatgactagctaacccaaaaggagacagtcggctccgttagcttagcatggggaggttttcaacgctgcactttttctctctgcgcttctataatcgcttctctcacacacactcacaaactcacacacacacagatttgcctttcagactttttgttttataataaagaacactgtacctgaaggccacat

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