LOCUS       XM_005167400            2615 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio distal-less homeobox 1a (dlx1a), transcript
            variant X1, mRNA.
ACCESSION   XM_005167400
VERSION     XM_005167400.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007120.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 15, 2017 this sequence version replaced XM_005167400.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
     gene            1..2615
                     /gene="dlx1a"
                     /gene_synonym="dlx1; zgc:111939"
                     /note="distal-less homeobox 1a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 9 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     52 samples with support for all annotated introns"
                     /db_xref="GeneID:30568"
                     /db_xref="ZFIN:ZDB-GENE-990415-48"
     CDS             790..1548
                     /gene="dlx1a"
                     /gene_synonym="dlx1; zgc:111939"
                     /codon_start=1
                     /product="homeobox protein Dlx1a isoform X1"
                     /protein_id="XP_005167457.1"
                     /db_xref="GeneID:30568"
                     /db_xref="ZFIN:ZDB-GENE-990415-48"
                     /translation="

MTMSTIPESLNSPVSGKSVFMEFGPPSQQMSPSSMTHGHYSMHCLHSSGHPQHDSAYSPAPSFPRSLPYPYVNSVGSHSSSPYLSTVQTYPNNSALAQTRLEDPAPESEKNTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGGTIDTNALANGRGLSTGSPSVAPVWNTTATVKTSTPTSYIPSYTSWYPTAHQDTMQQPQLM"

     misc_feature    1174..1344
                     /gene="dlx1a"
                     /gene_synonym="dlx1; zgc:111939"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

tcgctatccttgtgctatataacacttttttccgcttgtaatttcagattaatcgaaaacaatgaacacgtgcaactcgttgtccattgtgttctgaacgctgataattgtcggttgtaatactgtcattatttgcgctattgatgaaggatccccgaagtagattgcaaatgtcatttgaaatacaaattgcttgaaattggacaattttgaggatggtgggatatctaacaggtactgtcaaatgtggtcgtcagtccagtatcatccttggcatcgtgttgccgccaaatgtcattttttgtctaatattctggagtcttttctgatttcagtgtattttttgtgatgacggaatgtaagtgaatacatactgggattatgaccattttgaagaagactggagaaaagacaagcgcggaggctgagaaagagagagagaaaaaatgacaggaggatgtggaggtgtgatccgtgttcaacggggagtcgcacaccgacggtccgtcggacccgaccctcggattaccaatccgcatcgctcttggagggagtggaccaatcagagagcaccttggatacatattcatgattccctgattcaaacctttgagcgagtttgtgtggatccacagcatcgtacctagacttttcacagagacaaactacattttcttatgaatggaaagtgaaaaaatcagttgagcttaaattgggatccatccttcactcagatcatagaagaaaacaaaaaagcagggagagagagagagagcgagagcgagagacatgaccatgtctacaataccagagagtctaaacagcccagtctcaggaaagagcgtgttcatggaatttgggccaccaagtcagcaaatgtcgccttcatctatgacccacggacattactcaatgcactgtttacactcctccggacacccgcaacacgacagcgcatacagcccggctccgtccttccctagatctctgccttatccatacgtcaactcggtcggtagccattcctccagcccgtacctcagcaccgtgcagacctacccaaacaactcggctttggcgcagacccgattggaggacccagcaccggagtcagagaaaaacaccgtggtggaaggaggagaggttcgtttcaacgggaaaggcaaaaagatccgcaagccccggaccatatactccagtctccagctgcaggctctgaacaggcggttccagcaaacccagtatctggctctgccagagagagccgagctcgccgcatcactggggctcacgcaaacacaggtgaagatctggtttcagaacaaacgctccaagtttaagaaactgatgaagcagggtggaggaacaatagacacgaacgctttggctaacgggcgcggactgtccaccggatctccatccgtggcgcccgtctggaacacaacagccaccgtcaaaacgtccacaccgacctcttatattcccagttacacctcatggtatcccacagcacaccaggacactatgcagcagccacagctcatgtgaaccaggactgctgaaacaaccccgcccctctgtccaccaatggcccagttcaggggacccgacacaggcagtcactctgcggccttacacaccctggcccttcgcagcccagaccagatgtgatccggagacactctctctctctttttcacacaaaaagacacctgctgacacacactgtccagcggggactgaaccagggtcgtccggtcgcaccggagaagaaacacgtctcttttttgaattgaagggaatggcgggaaagtgggtcaaatcaaagctgctactctgccctttccgtgactctttttgttgttgtgtaaaaaaaaaaaaaaaatcatgagactagtcactaatgtatttcgttttcttcaaatttgttgttttccatatgaaatttggagttaccgggttgaacattacaccaaactgcgcatttctttccaagaagtggctaaaatacagtcgcttcaggcttattcagcgtgtaaagactgggataaatcacaccgtgagcaagtctcctgattttccccattttaaagggaagaaagacatctttaaacaagattattttgtatgtacggcgtttttttgtgtttatttaaatataacttatttagattatgtttttgttttgattatatgtttgtatgttttatttaaaaaaaaataaatgttctttaaattatgatgtgaggctgcactataaaacagaaacacttccctcggatttgaacctagtttgtaaacccgagtgttttactttattggatcacacaaagaggagataaccgcgtctatcatcagcgctggatgggaagtgttgacagctcttaaatgtacagaaatagtcgttttcgttgtgtgctgaataatttgtgcaaaaggatctaaacatggttgtgtttaattaaaattcatgtgtttttttccgttttacattgaaaagaaatcatagttttatagcctaccggtcatattaatttattgtttttgtttcatggagtcttgtataatgtgtaaacacgaacagtaaaaatctgcttataaaagaagttacaaaa

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